Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP23_F_N05
(894 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal pro... 372 e-103
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 35 0.068
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 33 0.28
U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical pr... 30 2.6
AL110490-13|CAB54454.1| 377|Caenorhabditis elegans Hypothetical... 29 4.5
AL110490-12|CAB54447.1| 326|Caenorhabditis elegans Hypothetical... 29 4.5
Z69885-4|CAA93757.1| 208|Caenorhabditis elegans Hypothetical pr... 29 5.9
AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta... 28 7.8
>AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 4 protein.
Length = 259
Score = 372 bits (914), Expect = e-103
Identities = 174/257 (67%), Positives = 205/257 (79%)
Frame = +2
Query: 92 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 271
RGPKKHLKRL AP WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL E
Sbjct: 2 RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAK 61
Query: 272 KIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYK 451
KI+ QR+++VDGKVRT +P GFMDVV+IE+TNE FR++YD KGR+ +HRI EA +K
Sbjct: 62 KILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFK 121
Query: 452 LCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCM 631
LCKVK V T K VP L T DGRTIRYPDP +KVND+I +I+T KI D +KFE GNL
Sbjct: 122 LCKVKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAY 181
Query: 632 ITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGXKAYISLPRGK 811
+TGGRN+GRVG I RER PG+ DI+HIKDS GH+FATR++NVF+IGKG KA +SLP G
Sbjct: 182 VTGGRNVGRVGIIGHRERLPGASDIIHIKDSAGHSFATRISNVFVIGKGNKALVSLPTGA 241
Query: 812 GIRLTIAEERDKRIAXK 862
GIRL+IAEERDKR+A K
Sbjct: 242 GIRLSIAEERDKRMAQK 258
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 35.1 bits (77), Expect = 0.068
Identities = 21/63 (33%), Positives = 24/63 (38%)
Frame = +1
Query: 664 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGXEGVHLAAARQGHPPHHRRGAG 843
HHR E AH G HGTH H E H+ G H + H P H G
Sbjct: 402 HHRHHGEHHGTHHSPAHHGEHGTHHGHHGEH--HHAPAHHGHHESHGHGHHSPAHHGHHG 459
Query: 844 QAH 852
+ H
Sbjct: 460 EHH 462
Score = 35.1 bits (77), Expect = 0.068
Identities = 20/56 (35%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Frame = +1
Query: 664 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGXEGV-HLAAARQGHPPHH 828
HH E H H G HGTH H G G H A A GH HH
Sbjct: 525 HHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGHHGHH 580
Score = 34.3 bits (75), Expect = 0.12
Identities = 28/113 (24%), Positives = 35/113 (30%), Gaps = 2/113 (1%)
Frame = +1
Query: 520 HHPLPRPTYQSQRFH-PVRHRNYEDYGLHQV*VWELVYDHGRP*LGACG-HHRVPRETSR 693
HH + + H P H ++ ++G H H G G HH P
Sbjct: 462 HHAPAHHGHHGEHHHAPAHHGHHGEHGTHH---GHHGSHHSPAHHGHHGEHHHAPAHHGH 518
Query: 694 LLRHCAHQGLHGTHLRHEVEQRVHNRQGXEGVHLAAARQGHPPHHRRGAGQAH 852
H H HG H H H G G H H P H G+ H
Sbjct: 519 ---HGEHGTHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHH 568
Score = 32.3 bits (70), Expect = 0.48
Identities = 25/79 (31%), Positives = 26/79 (32%), Gaps = 6/79 (7%)
Frame = +1
Query: 634 HGRP*LGACGHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGXEGVHLA--AAR 807
HG G+ G H T L H H G HGTH H G H A A
Sbjct: 643 HGDHHHGSHGVHHGHHGTHHSLAHHGHHGGHGTHHGAHHSPAHHGHHGAHHEHGAHHGAH 702
Query: 808 QGH----PPHHRRGAGQAH 852
GH HH G H
Sbjct: 703 HGHHDDKENHHHHGHHSKH 721
Score = 31.5 bits (68), Expect = 0.84
Identities = 17/51 (33%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Frame = +1
Query: 703 HCAHQGLHGTHLRHEVEQR-VHNRQGXEGVHLAAARQGHPPHHRRGAGQAH 852
H AH HG H RH E H+ G H H HH A H
Sbjct: 392 HAAHHDEHGVHHRHHGEHHGTHHSPAHHGEH-GTHHGHHGEHHHAPAHHGH 441
Score = 30.3 bits (65), Expect = 1.9
Identities = 21/67 (31%), Positives = 21/67 (31%), Gaps = 8/67 (11%)
Frame = +1
Query: 664 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRV---HNRQGXEGVHLAA----ARQG-HP 819
HH P H G HG H H H G G H A A G H
Sbjct: 631 HHHAPHHEHHEHHGDHHHGSHGVHHGHHGTHHSLAHHGHHGGHGTHHGAHHSPAHHGHHG 690
Query: 820 PHHRRGA 840
HH GA
Sbjct: 691 AHHEHGA 697
Score = 29.9 bits (64), Expect = 2.6
Identities = 27/115 (23%), Positives = 34/115 (29%), Gaps = 4/115 (3%)
Frame = +1
Query: 520 HHPLPRPTYQSQRFH-PVRHRNYEDYGLHQV*VWELV-YDHGRP*LGACGHH--RVPRET 687
HH + + H P H ++ +G H V + HG GHH
Sbjct: 555 HHSPAHHGHHGEHHHAPAHHGHHGHHGSHGVHHGHHESHGHGHHAPAHHGHHGEHGVHHG 614
Query: 688 SRLLRHCAHQGLHGTHLRHEVEQRVHNRQGXEGVHLAAARQGHPPHHRRGAGQAH 852
+ AH G HG H H H G GH H A H
Sbjct: 615 HHGAGYGAHHGHHGAHHHHAPHHEHHEHHGDHHHGSHGVHHGHHGTHHSLAHHGH 669
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 33.1 bits (72), Expect = 0.28
Identities = 19/56 (33%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Frame = +1
Query: 703 HCAHQGLHGTHLRHEVEQRVHNRQGXEGVHLAAARQGH--PPHHRRGAGQAHRXQG 864
HC G HG H R H G G R GH PPHH G++ G
Sbjct: 361 HCP--GRHGRHGSRSHSPRGHGHGGRHGPPHCPGRHGHHGPPHHHHHDGRSPSRHG 414
>U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical
protein C48B6.4 protein.
Length = 623
Score = 29.9 bits (64), Expect = 2.6
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Frame = +2
Query: 404 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 535
G+ + R+T E Y+ CK+++ A K VP Y+V H R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351
>AL110490-13|CAB54454.1| 377|Caenorhabditis elegans Hypothetical
protein Y48B6A.13b protein.
Length = 377
Score = 29.1 bits (62), Expect = 4.5
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +1
Query: 622 LVYDHGRP*LGACGHHRVPRETSRLLRH 705
LV+D GR +G+ R RETS+LL+H
Sbjct: 207 LVFDDGRKKVGSSEGMRRSRETSQLLKH 234
>AL110490-12|CAB54447.1| 326|Caenorhabditis elegans Hypothetical
protein Y48B6A.13a protein.
Length = 326
Score = 29.1 bits (62), Expect = 4.5
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +1
Query: 622 LVYDHGRP*LGACGHHRVPRETSRLLRH 705
LV+D GR +G+ R RETS+LL+H
Sbjct: 156 LVFDDGRKKVGSSEGMRRSRETSQLLKH 183
>Z69885-4|CAA93757.1| 208|Caenorhabditis elegans Hypothetical
protein T04C10.4 protein.
Length = 208
Score = 28.7 bits (61), Expect = 5.9
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 520 HHPLPRPTYQSQRFHPVRHRNYEDYGLH 603
HH PTY F+P H++Y+ + L+
Sbjct: 32 HHHHQSPTYPQSYFNPYSHQSYQQHHLN 59
>AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta
family protein 5 protein.
Length = 938
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = -1
Query: 561 ESLTLISGSG*RMVRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 397
E ++ + G V P C Y PVA + H Y A + ++R N P T
Sbjct: 868 EQASMYNAEG-EFVNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,458,013
Number of Sequences: 27780
Number of extensions: 473304
Number of successful extensions: 1435
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1411
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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