Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_M19
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc...    27   4.7  
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz...    26   6.2  
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||...    26   6.2  

>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
           Lag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = +1

Query: 70  RSCAQCGLKFIYLCFWSTYFDPGYSSNIWQSRPR 171
           R C Q    F YLCFW        SSN W +  +
Sbjct: 154 RFCEQGYSFFYYLCFWFLGLYIYRSSNYWSNEEK 187


>SPAC1039.04 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -3

Query: 336 PNKCLALGIPAVFGGTSIMLVSS 268
           P    ALGI A FGG  I+LV+S
Sbjct: 442 PKYVPALGITAGFGGLGILLVAS 464


>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 469

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 328 VPCSWHPRCVRRYFN 284
           +P  WH RCVR+ FN
Sbjct: 81  LPNQWHRRCVRQGFN 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,350,574
Number of Sequences: 5004
Number of extensions: 39767
Number of successful extensions: 90
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)