Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_M18
         (907 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    27   4.8  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   6.4  
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi...    26   8.5  

>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 98  VFQGCCYPAALLVCVNAQVSM 160
           + QGC  PA L++ VNAQV +
Sbjct: 578 LLQGCMAPATLVLKVNAQVML 598


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 214 PTPSRYSRLCHLGQGKWGE 270
           P+P+   R  HL +GKW E
Sbjct: 308 PSPTSARRASHLSEGKWDE 326


>SPCC1183.04c |pet127||mitochondrial membrane protein
           Pet127|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 524

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = +1

Query: 118 SXCTPCMRERSSFYASWLRREVSDHQPIFKVSPTPSRYSRLC 243
           S  T  M +   F + W     SD    F +SP    ++RLC
Sbjct: 132 SSLTGLMSQLHFFISKWKFPNFSDLSKGFYISPNERNFTRLC 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,073,442
Number of Sequences: 5004
Number of extensions: 59268
Number of successful extensions: 136
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)