Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_M18
         (907 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084154-10|AAK29873.1| 1140|Caenorhabditis elegans Hypothetical...    34   0.12 
U55857-1|AAA98026.1|  394|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AL132948-25|CAC51048.1|  438|Caenorhabditis elegans Hypothetical...    29   6.0  

>AC084154-10|AAK29873.1| 1140|Caenorhabditis elegans Hypothetical
           protein Y22D7AR.2 protein.
          Length = 1140

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +1

Query: 202 FKVSPTPSRYSRLCHLGQGKWGEGRSSGLWERATKDFLVK 321
           F  S T  R+ R+ HL Q  WG  +S GLW+ A    L++
Sbjct: 98  FWYSDTKDRFERITHLNQ--WGNTKSFGLWDSALDSKLIE 135


>U55857-1|AAA98026.1|  394|Caenorhabditis elegans Hypothetical
           protein K08D10.10 protein.
          Length = 394

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 783 YRTQINSYKSIDFYNNVFRQNFIHTSR 703
           ++ QI  Y  I F + +FRQN +HT++
Sbjct: 59  FKMQIRQYVMIPFNSPIFRQNQLHTTK 85


>AL132948-25|CAC51048.1|  438|Caenorhabditis elegans Hypothetical
           protein Y39B6A.33 protein.
          Length = 438

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 356 RSSLKNXPVVTTFTKKSLVALSQSPEDLPSPHXPCPK 246
           R++  N PVV   TKK   AL +  +++   H   PK
Sbjct: 59  RTATANKPVVPKLTKKQQAALEKITKNITQEHVTLPK 95


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,145,884
Number of Sequences: 27780
Number of extensions: 340405
Number of successful extensions: 788
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)