Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_M10
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A...    83   5e-17
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    81   3e-16
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    79   1e-15
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    27   3.6  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    27   3.6  
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    27   4.7  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   8.2  

>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 83.0 bits (196), Expect = 5e-17
 Identities = 34/61 (55%), Positives = 52/61 (85%)
 Frame = +2

Query: 107 LAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGREKLSSMPVG 286
           L  +GGK +P+A+D+E +LS+VGIEA+ E+++ +I ELNGKD+++LIAAG EKL+++P G
Sbjct: 9   LLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNEKLATVPTG 68

Query: 287 G 289
           G
Sbjct: 69  G 69


>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 80.6 bits (190), Expect = 3e-16
 Identities = 34/61 (55%), Positives = 52/61 (85%)
 Frame = +2

Query: 107 LAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGREKLSSMPVG 286
           L  +GGK +P+A+D+E +LS+VGIEA+ E+++ +I+ELNGK++E+LIAAG EKLS++P  
Sbjct: 9   LLTVGGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNEKLSTVPSA 68

Query: 287 G 289
           G
Sbjct: 69  G 69


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 78.6 bits (185), Expect = 1e-15
 Identities = 32/61 (52%), Positives = 52/61 (85%)
 Frame = +2

Query: 107 LAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGREKLSSMPVG 286
           L  +GGK +P+A+D+E +LS+VGIE++ E+++ +I EL+GKD+++LIAAG EKL+++P G
Sbjct: 9   LLTVGGKNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNEKLATVPSG 68

Query: 287 G 289
           G
Sbjct: 69  G 69


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 22/78 (28%), Positives = 39/78 (50%)
 Frame = -1

Query: 267 SFSRPAAISCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTAK*IRGHV 88
           SF  P+A +   S P+SS+ +F + S +++ P+     + S  A    P +T+  I    
Sbjct: 451 SFKAPSATTDKPSPPVSSIFSFNAPSAASTKPSPAVSSTFSFNAPTTTPSATSFSIINKE 510

Query: 87  THFLSPN*HETCNQNLKD 34
               SPN  ET + +L++
Sbjct: 511 KPARSPN--ETIDVDLEE 526


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
 Frame = -1

Query: 291 PPPTGIDDSFSRPAAISCSTSLPLSSVITFLSFSP----SASIPTELRIFSTSAAAGVVL 124
           PPP     SFS    I+ ++ +P SS  T  + SP    S+ +P+ + I S S ++  VL
Sbjct: 190 PPPASSTSSFS---TITNTSMIPSSSSFTTTTGSPYYNTSSFLPSSV-ISSASLSSSSVL 245

Query: 123 PPS 115
           P S
Sbjct: 246 PTS 248


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 722 MVTNKAIASXISXIKHFFHCILVVGCPNSSMY 627
           ++TN AI   +     F+H  + +GC N++ Y
Sbjct: 334 LLTNNAIVFALVLGSAFYHSWITLGCGNANFY 365


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 743 TCLLQLIMVTNKAIASXISXIKHFFH 666
           +CL+ L   TN  I   +   KHFFH
Sbjct: 765 SCLICLETYTNGDICRKLQACKHFFH 790


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,599,467
Number of Sequences: 5004
Number of extensions: 38189
Number of successful extensions: 114
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)