Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP23_F_M09
(878 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0235 - 1964981-1964997,1965545-1966325 30 2.1
09_02_0466 + 9599389-9599662,9600324-9600643,9600950-9601186,960... 30 2.8
08_01_0490 + 4284192-4284740 29 3.7
07_03_1369 + 26087947-26088039,26088396-26089073 29 3.7
04_01_0610 - 7997406-7998047,7998379-7998426,8000719-8001143,800... 29 4.9
03_02_0960 - 12739024-12739085,12739586-12739783,12739874-12739988 29 4.9
09_02_0317 + 7186148-7186243,7186406-7186572,7186766-7186878,718... 29 6.5
05_04_0029 - 17321378-17321905,17323348-17323525,17323531-173239... 29 6.5
04_04_0534 + 26071227-26071811 29 6.5
01_06_0250 + 27876358-27879261 29 6.5
06_01_1057 + 8441881-8442278,8442464-8442548,8442637-8442867 28 8.6
>01_01_0235 - 1964981-1964997,1965545-1966325
Length = 265
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +1
Query: 220 TEVCLGCICQAISGCKQG-LQCEGETCGLFRITWGYWADAGKPTINGLSPDAP-DAYSSC 393
T +CL + + C + +CE TCG + + +W G P N + +P A +SC
Sbjct: 4 TLLCLPLLASLLLLCHRARAECEPATCGNLTVRYPFW--LGGPNFNQSNQSSPSSALASC 61
>09_02_0466 +
9599389-9599662,9600324-9600643,9600950-9601186,
9601278-9601445,9601778-9601966
Length = 395
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -3
Query: 600 LRSVLREDIDALVKHVYIVKR-KFAGAPVASLLVDRHVVIAVDHS 469
L +L+ I+ + KHV ++ R K G P + LL H +++ H+
Sbjct: 244 LELLLQSGIELMGKHVTVIGRSKVVGLPTSLLLQRHHATVSIIHA 288
>08_01_0490 + 4284192-4284740
Length = 182
Score = 29.5 bits (63), Expect = 3.7
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -2
Query: 235 RDTPPSQGGVPRHRRNRLRQP 173
RD PP GG P H LRQP
Sbjct: 40 RDAPPETGGGPHHNAILLRQP 60
>07_03_1369 + 26087947-26088039,26088396-26089073
Length = 256
Score = 29.5 bits (63), Expect = 3.7
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +1
Query: 136 MASAVIRFCALLLVAGVCFADVSELPPVTEVCLGCICQAISGC 264
M AV+ ALLL AGV AD + + + G C +GC
Sbjct: 1 MKLAVVAVAALLLAAGVASADEFDFFYLVQQWPGSFCDTQAGC 43
>04_01_0610 -
7997406-7998047,7998379-7998426,8000719-8001143,
8002301-8002589
Length = 467
Score = 29.1 bits (62), Expect = 4.9
Identities = 20/61 (32%), Positives = 30/61 (49%)
Frame = -1
Query: 320 PHVMRKRPHVSPSHCRPCLHPEIAWQMQPRHTSVTGGSSETSAKQTPATNSNAQNLITAE 141
PH R R SP+H RP LH + PR T TG ++ T ++ N ++ L+ +
Sbjct: 412 PHTPRPRSPHSPTHPRPRLHHPL-----PRPTR-TGVANVTDDRRGEECNGGSRPLLPSR 465
Query: 140 A 138
A
Sbjct: 466 A 466
>03_02_0960 - 12739024-12739085,12739586-12739783,12739874-12739988
Length = 124
Score = 29.1 bits (62), Expect = 4.9
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -3
Query: 414 GAVRVHSAARVGIRSVR*ETIDSGFSGISPVAPCDAEEA 298
G +R H+AAR + T D+ + P P AEEA
Sbjct: 22 GRLRKHAAARPAAVKINDPTGDAAMVAVPPTTPAGAEEA 60
>09_02_0317 +
7186148-7186243,7186406-7186572,7186766-7186878,
7187059-7187133,7187215-7187328,7187545-7187612,
7187690-7187773,7187966-7188019,7188104-7188184,
7188279-7188372,7188501-7188574,7188656-7188766,
7188976-7189032,7189119-7189223,7189584-7189687,
7190021-7190186,7190279-7190416
Length = 566
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 343 PTINGLSPDAPDAYSSCTVDPYCAAQTVQNYMRRFGQ 453
P + G + S+ T+DP CA VQ + FGQ
Sbjct: 29 PCLEGKAIRVEFGDSTTTIDPTCANMVVQEFPNTFGQ 65
>05_04_0029 -
17321378-17321905,17323348-17323525,17323531-17323910,
17323936-17324052
Length = 400
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +1
Query: 472 VVNCYDYMAIH-KKGGYGCTGELPFNYVNVFNQCINVFAQYRS 597
+V C Y+ I+ +GG GC + V C+NV Y S
Sbjct: 350 LVPCLSYLKIYMSRGGVGCFERTMIVGILVIGVCVNVVGTYTS 392
>04_04_0534 + 26071227-26071811
Length = 194
Score = 28.7 bits (61), Expect = 6.5
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +2
Query: 389 AALWTRTAPRRPSKTT*EDLARTATATEWSTAMTTWRSTRREATGAPA 532
A L TR RRP++ + R A W +TTWR T + G P+
Sbjct: 90 ARLATRRRGRRPARRRRDCAWRRPAAWRW---LTTWRRTASKPDGYPS 134
>01_06_0250 + 27876358-27879261
Length = 967
Score = 28.7 bits (61), Expect = 6.5
Identities = 41/142 (28%), Positives = 61/142 (42%), Gaps = 5/142 (3%)
Frame = -3
Query: 534 FAGAPVASLLVDRHVVIAVDHSVAVAVLAKSSHVVLDGLRGAVRVHSA--ARVGIRSVR* 361
+AG + L+ + ++ A+ S A A+ A +V + LR A V+ A AR + SVR
Sbjct: 829 YAGLVLDGFLLPQVILNALSRSRARAISAWF-YVGVTVLRAAPHVYDALRARGYVPSVRP 887
Query: 360 ETI---DSGFSGISPVAPCDAEEAARFTLALQTLLASRDSLANAAETHLRHRGEFRDIGE 190
+ S + VA A +LAL L R L A R GE+ +
Sbjct: 888 SSTYVYASPRDDLFGVAWDVAVPLGAASLALLLFLQQR--LGGAFFVRGRRFGEYEMVPT 945
Query: 189 TDSGNQQQRTKPDHSRSHCVEN 124
T S +Q+ K DH R + N
Sbjct: 946 TVSSHQEGDKKMDHERGDVIAN 967
>06_01_1057 + 8441881-8442278,8442464-8442548,8442637-8442867
Length = 237
Score = 28.3 bits (60), Expect = 8.6
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = -1
Query: 278 CRPCLHPEIAWQMQPRHTSVTGGSSETSAK-QTPATNSNAQNLITAEAIAS 129
CR L P + ++++PR + T S+ SA + ATN+ +L +A AS
Sbjct: 66 CRRHLQPCLRFRLRPRQPAATYTSTSASASPRLLATNTTEASLTSATDCAS 116
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,249,203
Number of Sequences: 37544
Number of extensions: 495362
Number of successful extensions: 1510
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1509
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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