Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP23_F_M05
(886 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|... 215 9e-57
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 27 2.7
SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomy... 27 3.6
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 27 4.7
SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub... 26 8.2
SPBC216.03 |||conserved fungal protein|Schizosaccharomyces pombe... 26 8.2
SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom... 26 8.2
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ... 26 8.2
>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 215 bits (524), Expect = 9e-57
Identities = 95/147 (64%), Positives = 113/147 (76%)
Frame = +2
Query: 209 TTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRERIPERVVHAKGAGAFGYFEV 388
TT +G P+ A VGK GP LLQD + +D FDRERIPERVVHAKG+GAFG FE
Sbjct: 13 TTNTGCPIFNPMAAARVGKGGPVLLQDSHLIDVFQHFDRERIPERVVHAKGSGAFGEFEC 72
Query: 389 THDITKYSAAKVFESIGKRTPIAVRFSTVGGESGSADTVRDPRGFAVKFYTDDGVWDLVG 568
T DITKY+ +F +GK+TP+ RFSTVGGE G+ DT RDPRGFA+KFYTD+G++D+VG
Sbjct: 73 TDDITKYTKHTMFSKVGKKTPMVARFSTVGGERGTPDTARDPRGFALKFYTDEGIFDMVG 132
Query: 569 NNTPIFFIRDPTLFPSFIHTQKRNPGN 649
NNTP+FF+RDP FP FIHTQKRNP N
Sbjct: 133 NNTPVFFLRDPAKFPLFIHTQKRNPQN 159
Score = 59.7 bits (138), Expect = 5e-10
Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Frame = +3
Query: 654 LKDPDMFWDLLTLRPETIHQLLYLFGD-RGIPDGYRHMNGYGSHTFKLXEFSRCWVLGKX 830
+KD MFWD L+ E+IHQ++ LF D G P YR M+G+ SHT+K + K
Sbjct: 161 MKDATMFWDYLSQNAESIHQVMILFSDLGGTPYSYRFMDGFSSHTYKFVNDKGEFYYCKW 220
Query: 831 HYKTXRG*K 857
H+ T +G K
Sbjct: 221 HFITNQGTK 229
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 27.5 bits (58), Expect = 2.7
Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -3
Query: 527 QQNLEGHEQYQQIHSLHQLLRI*QQSVSFCL-WTQILWQHCTW 402
++ E +E+Y+Q+ + SV + + W Q+L+ CTW
Sbjct: 278 ERKRENYEEYKQVDRIVAKHLNSDGSVEYLVKWKQLLYDFCTW 320
>SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 538
Score = 27.1 bits (57), Expect = 3.6
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +2
Query: 587 FIRDPTLFPSFIHTQKR 637
+++DPTL P F+HT R
Sbjct: 506 WVKDPTLTPKFLHTSYR 522
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 26.6 bits (56), Expect = 4.7
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +2
Query: 590 IRDPTLFPSFIHTQKRNPGNTSERSRHVLGPFDLKTRDHPSTSLL 724
I D L PSF + + P ++S RSR GP+ RD +LL
Sbjct: 87 IHDNQLSPSFNTSYQAIPSSSSNRSRG--GPYTPSIRDDSLLALL 129
>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 462
Score = 25.8 bits (54), Expect = 8.2
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -3
Query: 152 LGLLKPFCMFPSYYAAFVV*YHGATHW 72
LG+ +PF ++ +Y V YH + W
Sbjct: 334 LGISRPFMVYSTYQQVLVETYHQLSKW 360
>SPBC216.03 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 247
Score = 25.8 bits (54), Expect = 8.2
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +2
Query: 302 DEMSSFDRERIPERVVHAKGAGAFGYFEVTHDITKYSAAKVFESI 436
++++ F E P+ V+ A GAG G E T + A KV++++
Sbjct: 59 NDIAQFLAEIHPDVVIFAAGAGGKGGPERTRAVDYEGAIKVYDAM 103
>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 25.8 bits (54), Expect = 8.2
Identities = 19/55 (34%), Positives = 26/55 (47%)
Frame = -2
Query: 468 ENLTAIGVLLPMDSNTLAALYLVMS*VTSKYPKAPAPLACTTRSGIRSLSKDDIS 304
+ + I L SNT A S V + Y K+P +A T R I+S +K IS
Sbjct: 294 DTVDIIRALKEYASNTSALAEFAKSTVKTLYSKSPTSIAVTNRL-IKSAAKWSIS 347
>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 25.8 bits (54), Expect = 8.2
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -2
Query: 501 VSADPLSPPTVENLTAIGVLLPMDSNTL 418
VS +P + +NLTAIGV P+D+N +
Sbjct: 142 VSINPYNFSAFQNLTAIGV--PLDANNV 167
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,831,486
Number of Sequences: 5004
Number of extensions: 85502
Number of successful extensions: 229
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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