Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_M04
         (887 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0363 - 15172528-15173224,15174564-15174856                       30   2.8  
04_04_1263 - 32207636-32207938,32208020-32208170,32208263-322085...    29   3.7  
06_02_0187 + 12805788-12807007,12807059-12807186,12807811-128078...    29   4.9  
04_03_0232 - 13049649-13052807                                         28   8.6  

>06_02_0363 - 15172528-15173224,15174564-15174856
          Length = 329

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -1

Query: 845 MSGRPATSPSCPTALRLPRGSRSYRAPRH 759
           +SGR A +P     LRLPR   + R PRH
Sbjct: 257 LSGRSAPTPPQARELRLPRRPGALRRPRH 285


>04_04_1263 -
           32207636-32207938,32208020-32208170,32208263-32208500,
           32208604-32208814,32208927-32209108,32209196-32209297,
           32210002-32211187,32212103-32212499,32212551-32212582,
           32212885-32213157,32213307-32213394,32213486-32213723,
           32213824-32214034,32214119-32214300,32214378-32214479,
           32214801-32216224,32216751-32216822,32217688-32217719,
           32218186-32218263,32218425-32218512,32218608-32218845,
           32219060-32219162,32219386-32219558,32219644-32219745,
           32219825-32220606,32220659-32221012,32224055-32224140,
           32224250-32224400,32224534-32224771,32224876-32225119,
           32225190-32225368,32225577-32225675,32225835-32227083
          Length = 3195

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
 Frame = +3

Query: 234 SLEYESQGKGSIIQNVVNNLIIDKRRNTME------YCYKLWV-GNGQEIVRKYFPLNFX 392
           S++ ++   G ++  +V+ L I   + T        Y ++LW  GN  E++ K+F  ++ 
Sbjct: 684 SVKSDTYSFGVLLLEIVSGLKISSSKLTPNFFSLTAYAWRLWKDGNATELLDKFFVDSYP 743

Query: 393 THHGRKLCQ--DHLQKLQP 443
            H     CQ  D L   +P
Sbjct: 744 LHEAFSFCQSDDRLTPAKP 762


>06_02_0187 +
           12805788-12807007,12807059-12807186,12807811-12807859,
           12808508-12808853
          Length = 580

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
 Frame = -2

Query: 304 LSMIRLLTTFWMMEPLPWL-----SYSKL*RTALS*SPVRMLLYSFSSRSWLEVSADSST 140
           L+++ L+   W + P   L     + S      L  SP   +  SF S +    S D++T
Sbjct: 36  LALLTLIMALWQLHPYQPLVLLPAALSSSPCPLLPRSPTSGIAVSFLSTAAATNSTDTAT 95

Query: 139 TPALAASMHIANTTR 95
            P   A+  +A TTR
Sbjct: 96  VPTTTAAARVAATTR 110


>04_03_0232 - 13049649-13052807
          Length = 1052

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = -2

Query: 190 YSFSSRSWLEVSADSSTTPALAASMHIANTTRSFILLGAFQIAFKSANQILR 35
           +  SS+ W   +   STT    A++ +     SF +  A  +  KS++ ILR
Sbjct: 288 FGLSSKEWRHTNRWISTTHQYVATVKVPPQATSFFVTEAGSLIDKSSSMILR 339


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,703,249
Number of Sequences: 37544
Number of extensions: 471780
Number of successful extensions: 1386
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1386
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)