Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_M03
         (994 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   9.9  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.6 bits (51), Expect = 1.4
 Identities = 11/35 (31%), Positives = 11/35 (31%)
 Frame = +2

Query: 863 PXPXXRARXPPPXXGXPPPPXPXXXPXPGXXPXXP 967
           P P       P       PP P   P PG  P  P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55



 Score = 23.4 bits (48), Expect = 3.2
 Identities = 11/41 (26%), Positives = 16/41 (39%)
 Frame = +1

Query: 847 PAXXAPXARXAGPXPPPXPGXXPPPXPAXRXXXRGXAXSPP 969
           P+  AP  + +    P  P    PP P+      G   +PP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 22.6 bits (46), Expect = 5.7
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +2

Query: 893 PPXXGXPPPPXPXXXPXPGXXP 958
           PP  G P PP P      G  P
Sbjct: 410 PPSAGAPMPPIPNMSNMSGMPP 431


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 9.9
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +2

Query: 641  LPRXAARXXPPPPPXP 688
            L R A R   PPPP P
Sbjct: 1345 LERTAWRQQQPPPPPP 1360


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.143    0.499 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,736
Number of Sequences: 438
Number of extensions: 6844
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32895408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)