Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_L23
         (934 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.21 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    31   0.23 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   0.82 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   5.0  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    22   7.4  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.1 bits (62), Expect(2) = 0.21
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = -1

Query: 526 GGKXPPPPXXGGXXKXXPPGAPPXXXGFXGG 434
           GG  PPPP  G      PP  PP      GG
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 15/38 (39%), Positives = 15/38 (39%)
 Frame = +3

Query: 435 PPKNPXXXGGAPGGXXFXXPPXXGGGGXFPPXKXPPPP 548
           PP  P   G  P       PP  G  G  PP   PPPP
Sbjct: 752 PPPAPIMGGPPP------PPPPPGVAGAGPPPPPPPPP 783



 Score = 20.6 bits (41), Expect(2) = 0.21
 Identities = 7/14 (50%), Positives = 7/14 (50%)
 Frame = -1

Query: 658 PPPXGXXAPPPPXP 617
           PPP      PPP P
Sbjct: 752 PPPAPIMGGPPPPP 765


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 16/39 (41%), Positives = 16/39 (41%)
 Frame = -1

Query: 550 GGGGGXFXGGKXPPPPXXGGXXKXXPPGAPPXXXGFXGG 434
           GGG G F GG   PPP  GG       G      G  GG
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGG 225



 Score = 31.1 bits (67), Expect = 0.23
 Identities = 14/29 (48%), Positives = 14/29 (48%)
 Frame = -3

Query: 551 GGGGGXFXGGEXXPPPXPRGXXKXXXPGG 465
           GGG G F GG   PPP P G       GG
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGG 215


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect(2) = 0.82
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -1

Query: 655 PPXGXXAPPPPXP 617
           PP G  APPPP P
Sbjct: 354 PPQGRSAPPPPPP 366



 Score = 21.4 bits (43), Expect(2) = 0.82
 Identities = 8/22 (36%), Positives = 8/22 (36%)
 Frame = -1

Query: 511 PPPXXGGXXKXXPPGAPPXXXG 446
           PPP         PP  PP   G
Sbjct: 376 PPPLSSSRAVSNPPAPPPAIPG 397


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 492 PPXXGGGGXFPPXKXPPPPP 551
           PP     G  PP + PPPPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPPP 29


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 22.2 bits (45), Expect(2) = 7.4
 Identities = 8/19 (42%), Positives = 8/19 (42%)
 Frame = -1

Query: 679  PXXXXKXPPPXGXXAPPPP 623
            P      PPP     PPPP
Sbjct: 1700 PQMSAPTPPPPPMSVPPPP 1718



 Score = 21.8 bits (44), Expect(2) = 7.4
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = -1

Query: 511  PPPXXGGXXKXXPPGAPP 458
            PPP         PP APP
Sbjct: 1715 PPPPSAPPMPAGPPSAPP 1732


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,259,225
Number of Sequences: 5004
Number of extensions: 13428
Number of successful extensions: 67
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)