Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_L20
         (883 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc...   151   2e-37
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa...   151   2e-37
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz...    37   0.004
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    26   8.2  

>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score =  151 bits (365), Expect = 2e-37
 Identities = 71/111 (63%), Positives = 86/111 (77%)
 Frame = +1

Query: 205 GVHWTWLSPDCCSTNFXEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAF 384
           G   + + P+       EPIL+ G +KF+ VDIRV V GGGHV+Q+YAIRQAISKA++A+
Sbjct: 30  GAPLSLVQPEILRMKVYEPILVAGADKFAGVDIRVRVSGGGHVSQIYAIRQAISKAIVAY 89

Query: 385 YQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 537
           YQK+VDE SK E+K  L+ YDR+LLVADPRR EPKKFGG GARAR QKSYR
Sbjct: 90  YQKFVDEHSKAELKKALITYDRTLLVADPRRMEPKKFGGHGARARQQKSYR 140



 Score = 59.7 bits (138), Expect = 5e-10
 Identities = 25/45 (55%), Positives = 36/45 (80%)
 Frame = +3

Query: 117 IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKL 251
           +Q+VQ FG+K  ATAVA+CK G G+++VNG PL LV+P +L+ K+
Sbjct: 1   MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKV 45


>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 140

 Score =  151 bits (365), Expect = 2e-37
 Identities = 71/111 (63%), Positives = 86/111 (77%)
 Frame = +1

Query: 205 GVHWTWLSPDCCSTNFXEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAF 384
           G   + + P+       EPIL+ G +KF+ VDIRV V GGGHV+Q+YAIRQAISKA++A+
Sbjct: 30  GAPLSLVQPEILRMKVYEPILVAGADKFAGVDIRVRVSGGGHVSQIYAIRQAISKAIVAY 89

Query: 385 YQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 537
           YQK+VDE SK E+K  L+ YDR+LLVADPRR EPKKFGG GARAR QKSYR
Sbjct: 90  YQKFVDEHSKAELKKALITYDRTLLVADPRRMEPKKFGGHGARARQQKSYR 140



 Score = 59.7 bits (138), Expect = 5e-10
 Identities = 25/45 (55%), Positives = 36/45 (80%)
 Frame = +3

Query: 117 IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKL 251
           +Q+VQ FG+K  ATAVA+CK G G+++VNG PL LV+P +L+ K+
Sbjct: 1   MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKV 45


>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 36.7 bits (81), Expect = 0.004
 Identities = 28/75 (37%), Positives = 38/75 (50%)
 Frame = +1

Query: 298 DIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRR 477
           ++  TV GGG   Q  A+  AISK+LI      + E S K+     V  D   ++ D R+
Sbjct: 64  NVWATVHGGGPTGQSGAVHAAISKSLI------LQEPSLKQ-----VIKDTHCVLNDKRK 112

Query: 478 CEPKKFGGPGARARY 522
            E KK G P AR +Y
Sbjct: 113 VERKKTGQPKARKKY 127



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 138 GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQXTYPFA 272
           G++K++ A      G G   VNG P D+   R++  K    YP A
Sbjct: 12  GKRKSSKATVKMLPGTGKFYVNGSPFDVYFQRMVHRK-HAVYPLA 55


>SPBC1826.01c |mot1||TATA-binding protein associated factor
            Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 22/80 (27%), Positives = 35/80 (43%)
 Frame = -3

Query: 299  STIENFSLPSKRIGSLKFVLQQSGLNQVQWTPVYTQHSMTTLAIRNCGGGFLTSEYLDGL 120
            S +E FS+P      L+   QQ G+N + +   Y  H            G L  +   G 
Sbjct: 1343 SKVEAFSIPVPISADLR-KYQQEGVNWLAFLNKYELH------------GILCDDMGLGK 1389

Query: 119  DGLTSCLLHSSHFDRERLIE 60
               T C++ S H++R++L E
Sbjct: 1390 TLQTICIVASDHYNRQKLFE 1409


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,150,879
Number of Sequences: 5004
Number of extensions: 58083
Number of successful extensions: 150
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)