Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_L20
         (883 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0152 - 1168928-1169377                                          159   3e-39
11_01_0155 - 1287003-1287452                                          159   3e-39
07_03_1553 - 27653473-27653490,27653634-27653673,27653852-276539...    32   0.70 
06_03_0062 + 16116893-16117029,16117472-16117760                       29   3.7  
03_04_0214 + 18688480-18688832,18688956-18688999,18689039-186891...    29   4.9  
12_01_0727 + 6446283-6449300                                           28   8.6  
01_05_0500 + 22752190-22752329,22752957-22753032,22753292-227533...    28   8.6  

>12_01_0152 - 1168928-1169377
          Length = 149

 Score =  159 bits (386), Expect = 3e-39
 Identities = 72/111 (64%), Positives = 89/111 (80%)
 Frame = +1

Query: 205 GVHWTWLSPDCCSTNFXEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAF 384
           GV    + P+       EPILL G+ +F  +D+R+ V+GGG  +Q+YAIRQAI+KAL+A+
Sbjct: 39  GVPIELIRPEMLRLKAFEPILLAGRSRFKDIDMRIRVRGGGKTSQIYAIRQAIAKALVAY 98

Query: 385 YQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 537
           YQKYVDEASKKE+KDI  +YDR+LLVADPRRCEPKKFGG GARAR+QKSYR
Sbjct: 99  YQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 149



 Score = 62.5 bits (145), Expect = 4e-10
 Identities = 26/47 (55%), Positives = 35/47 (74%)
 Frame = +3

Query: 108 REPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYK 248
           R P   VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K
Sbjct: 7   RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLK 53


>11_01_0155 - 1287003-1287452
          Length = 149

 Score =  159 bits (386), Expect = 3e-39
 Identities = 72/111 (64%), Positives = 89/111 (80%)
 Frame = +1

Query: 205 GVHWTWLSPDCCSTNFXEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAF 384
           GV    + P+       EPILL G+ +F  +D+R+ V+GGG  +Q+YAIRQAI+KAL+A+
Sbjct: 39  GVPIELIRPEMLRLKAFEPILLAGRSRFKDIDMRIRVRGGGKTSQIYAIRQAIAKALVAY 98

Query: 385 YQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 537
           YQKYVDEASKKE+KDI  +YDR+LLVADPRRCEPKKFGG GARAR+QKSYR
Sbjct: 99  YQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 149



 Score = 62.5 bits (145), Expect = 4e-10
 Identities = 26/47 (55%), Positives = 35/47 (74%)
 Frame = +3

Query: 108 REPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYK 248
           R P   VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K
Sbjct: 7   RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLK 53


>07_03_1553 -
           27653473-27653490,27653634-27653673,27653852-27653939,
           27654150-27654230,27654644-27655084,27655692-27656325
          Length = 433

 Score = 31.9 bits (69), Expect = 0.70
 Identities = 16/26 (61%), Positives = 18/26 (69%)
 Frame = +1

Query: 298 DIRVTVKGGGHVAQVYAIRQAISKAL 375
           D+  TVKGGG   QV AIR  IS+AL
Sbjct: 347 DVTCTVKGGGVSGQVGAIRLGISRAL 372


>06_03_0062 + 16116893-16117029,16117472-16117760
          Length = 141

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -2

Query: 213 MDARLHAAFHDHA--CNTQLRWRFSYVRILGRPGW 115
           +DARL A   +HA   N + RWR      LG+ GW
Sbjct: 26  LDARLWAVESEHARVVNPEQRWRARSTGWLGKKGW 60


>03_04_0214 +
           18688480-18688832,18688956-18688999,18689039-18689101,
           18689883-18689956,18691526-18692017
          Length = 341

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +3

Query: 24  TIGNSLRFNLDSFNQSFSVKMAAVQEARREPIQAVQVFGRKKTATAVAYCKRGHGM 191
           T+  S + N  S+ ++  + +A   +  R  I+ V++FGR+      AY   G GM
Sbjct: 107 TVTYSPQANQQSYYRTVPIFIADTCKDLRAVIETVRLFGRRTAVQQSAYWTAGQGM 162


>12_01_0727 + 6446283-6449300
          Length = 1005

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
 Frame = -3

Query: 278 LPSKRIGSLKFV--LQQSGLNQVQWTPVYTQH--SMTTLAIRNCGGGFLTSEYLDGLDGL 111
           LPS  IG LK +  L+ SGL  V   P +  +  S+T L   +CG        +  L  L
Sbjct: 367 LPSS-IGKLKSLSLLEVSGLELVGSMPSWISNLTSLTILKFFSCGLSGPIPASIGNLTKL 425

Query: 110 TSCLLHSSHFDRE 72
           T   L++ HF  E
Sbjct: 426 TKLALYNCHFSGE 438


>01_05_0500 +
           22752190-22752329,22752957-22753032,22753292-22753351,
           22754718-22754882,22756299-22756358
          Length = 166

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 212 WTPVYTQHSMTTLAIRNCGGGFLTSEYLD 126
           W  V T H +T +A R+C G F   ++LD
Sbjct: 18  WNYVVTAHKLTVVA-RSCVGNFTAPDHLD 45


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,746,091
Number of Sequences: 37544
Number of extensions: 436676
Number of successful extensions: 1111
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1111
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)