Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_L20
         (883 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical pr...   158   6e-39
Z93372-4|CAB07546.1|  301|Caenorhabditis elegans Hypothetical pr...    31   1.1  
U23525-10|AAC46571.2|  503|Caenorhabditis elegans Hypothetical p...    28   7.7  
U23525-9|ABC71820.1|  766|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical
           protein T01C3.6 protein.
          Length = 144

 Score =  158 bits (383), Expect = 6e-39
 Identities = 71/106 (66%), Positives = 86/106 (81%)
 Frame = +1

Query: 220 WLSPDCCSTNFXEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYV 399
           +L P        EP+LL+GKE+F  VDIR+ V GGGHVAQ+YA+RQA++KAL+A+Y KYV
Sbjct: 39  FLEPQILRIKLQEPLLLVGKERFQDVDIRIRVSGGGHVAQIYAVRQALAKALVAYYHKYV 98

Query: 400 DEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 537
           DE SK+E+K+I   YD+SLLVADPRR E KKFGGPGARARYQKSYR
Sbjct: 99  DEQSKRELKNIFAAYDKSLLVADPRRRESKKFGGPGARARYQKSYR 144



 Score = 74.5 bits (175), Expect = 9e-14
 Identities = 30/46 (65%), Positives = 42/46 (91%)
 Frame = +3

Query: 117 IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQ 254
           +Q+VQ FGRKKTATAVA+CK+G G+++VNGRPL+ +EP++L+ KLQ
Sbjct: 5   VQSVQTFGRKKTATAVAHCKKGQGLIKVNGRPLEFLEPQILRIKLQ 50


>Z93372-4|CAB07546.1|  301|Caenorhabditis elegans Hypothetical
           protein BE10.4 protein.
          Length = 301

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 394 YVDEASKKEIKDILVQYDRSLLVADPRRCE 483
           + DE  +KE+ D+  QYDRS+ + D  R E
Sbjct: 151 FCDEVQQKEVGDLFHQYDRSIEIIDKVRHE 180


>U23525-10|AAC46571.2|  503|Caenorhabditis elegans Hypothetical
           protein K11G12.6a protein.
          Length = 503

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = +3

Query: 267 FARQGKILYGRHQSDSQGWWSCSTSLRYQTSYFKGPDCLLSEICRRSL 410
           FAR    +Y       + WW+ S    Y  ++ KG D LL+ +    +
Sbjct: 399 FARAKLYMYHFTDIGDKNWWTRSFQEEYMPTFNKGNDALLNYLTEHKI 446


>U23525-9|ABC71820.1|  766|Caenorhabditis elegans Hypothetical
           protein K11G12.6b protein.
          Length = 766

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = +3

Query: 267 FARQGKILYGRHQSDSQGWWSCSTSLRYQTSYFKGPDCLLSEICRRSL 410
           FAR    +Y       + WW+ S    Y  ++ KG D LL+ +    +
Sbjct: 662 FARAKLYMYHFTDIGDKNWWTRSFQEEYMPTFNKGNDALLNYLTEHKI 709


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,848,875
Number of Sequences: 27780
Number of extensions: 343872
Number of successful extensions: 802
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)