Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP23_F_L18
(939 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 0.95
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 28 1.7
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 2.2
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 2.9
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 5.0
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 8.8
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub... 26 8.8
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.1 bits (62), Expect = 0.95
Identities = 18/68 (26%), Positives = 23/68 (33%)
Frame = +3
Query: 735 PPXNPPXAPSXSXPXXLTGILSPXFPLGEXGGXXXNPPPXGFPXPXXGXXPPXRGLXXQN 914
P PP P + P ++ P P+ PPP P P P L +
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVP------PPPSAPPMPAGPPSAPPPPLPASS 1739
Query: 915 PPVXPRPG 938
P P PG
Sbjct: 1740 APSVPNPG 1747
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 28.3 bits (60), Expect = 1.7
Identities = 23/75 (30%), Positives = 24/75 (32%), Gaps = 1/75 (1%)
Frame = -2
Query: 848 GGVXXXAPXFPKGEXGGXDSG*XXGXGXRGGXXGVXRGXXXGFXXXPXGF-APXXNXGGI 672
GG + P G G G G G G G G GF P GF GG
Sbjct: 191 GGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGG 250
Query: 671 LXRXFXGGGAXGKXP 627
L G G G P
Sbjct: 251 LGGFGGGPGGFGGGP 265
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.9 bits (59), Expect = 2.2
Identities = 27/105 (25%), Positives = 30/105 (28%), Gaps = 6/105 (5%)
Frame = +1
Query: 475 PLAPGLXXGXXVXPPPXGGXRXXPKXGXXPGKXXXTKGPXKXXNPKKGXLXGFFPXAPPP 654
PL P G PPP R P G P ++ P P PP
Sbjct: 352 PLPP---QGRSAPPPPP--PRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPL 406
Query: 655 XNXLXKX------PPXFXXGANPXGXXKNPXLXPLXTPXXPPLXP 771
N PP A P P P+ P PPL P
Sbjct: 407 GNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPP 451
Score = 26.6 bits (56), Expect = 5.0
Identities = 20/79 (25%), Positives = 22/79 (27%), Gaps = 1/79 (1%)
Frame = +3
Query: 702 PPRXXXKSXXXPPXNPPXAPSXSXPXXLTGILSPXFPLGEXGGXXXNP-PPXGFPXPXXG 878
PP PP P + S P L P P+G P P P P
Sbjct: 404 PPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGM 463
Query: 879 XXPPXRGLXXQNPPVXPRP 935
P PP P P
Sbjct: 464 PAAPPLPPAAPAPPPAPAP 482
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.5 bits (58), Expect = 2.9
Identities = 18/62 (29%), Positives = 21/62 (33%), Gaps = 1/62 (1%)
Frame = +3
Query: 747 PPXAPSXSXPXXLTGILSPXFPLGEXGGXXXNPPPXGF-PXPXXGXXPPXRGLXXQNPPV 923
P APS + P + +P P G P G P P PP PPV
Sbjct: 1151 PVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPV 1210
Query: 924 XP 929
P
Sbjct: 1211 PP 1212
Score = 27.1 bits (57), Expect = 3.8
Identities = 17/63 (26%), Positives = 21/63 (33%)
Frame = +3
Query: 747 PPXAPSXSXPXXLTGILSPXFPLGEXGGXXXNPPPXGFPXPXXGXXPPXRGLXXQNPPVX 926
P APS + P + +P P+ P P P PP PPV
Sbjct: 1113 PVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPV- 1171
Query: 927 PRP 935
P P
Sbjct: 1172 PAP 1174
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.6 bits (56), Expect = 5.0
Identities = 15/46 (32%), Positives = 15/46 (32%)
Frame = +2
Query: 794 PXPXFPPWGXXGPFXXPPPXXFSXSGXWXXPPXPGVXXPKPPRXXP 931
P P P PPP G PP PGV PP P
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIM-GGPPPPPPPPGVAGAGPPPPPP 780
Score = 25.8 bits (54), Expect = 8.8
Identities = 16/50 (32%), Positives = 19/50 (38%)
Frame = +2
Query: 746 PPXXPLXFPTXXVNRNPXPXFPPWGXXGPFXXPPPXXFSXSGXWXXPPXP 895
PP + PT P P P GP PPP + +G PP P
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPI-MGGPPPPPPPPGVAGAGPPPPPPPP 782
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 8.8
Identities = 15/54 (27%), Positives = 18/54 (33%)
Frame = +1
Query: 643 APPPXNXLXKXPPXFXXGANPXGXXKNPXLXPLXTPXXPPLXPXPXX*PESXPP 804
APP + P A P K+P P PP+ P P S P
Sbjct: 157 APPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQAP 210
>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 25.8 bits (54), Expect = 8.8
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +3
Query: 861 PXPXXGXXPPXRGLXXQNPPVXPRPG 938
P P G P L + P+ PRPG
Sbjct: 35 PRPKPGRKPALDALGRRKAPIKPRPG 60
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,073,101
Number of Sequences: 5004
Number of extensions: 25966
Number of successful extensions: 65
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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