Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_L11
         (907 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    28   1.6  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     27   4.8  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    26   8.5  
SPMIT.03 |||mitochondrial DNA binding endonuclease|Schizosacchar...    26   8.5  

>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +2

Query: 110 HVLLKTFKMKTIYFVLLISVCAVSAIYLPDDSNSADLDKYKSESF 244
           H+  KT K    +  LL++   +   Y+PD+S SA+   +++  +
Sbjct: 233 HMYYKTGKTDNNFHFLLVATLCLGYTYMPDESPSANYPYHEAYEY 277


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 752 FSCPFSLVSFCHLFQASFFPWPLIFLTSCLPS 657
           F+  F+ V+F  +  + +F W L+FL   LP+
Sbjct: 722 FAQTFAFVTFNKVCTSQYFMWYLVFLPLVLPN 753


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1260

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +2

Query: 800 NESLNVDILVEKIYNGYGLTD-LNTDIEKK 886
           NES+N DI++EK      L D +N DIEK+
Sbjct: 414 NESMNKDIVIEKFSE---LRDIINIDIEKE 440


>SPMIT.03 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial||Partial|Manual
          Length = 323

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 18  VATSRESXKXLKICNERARTTNKYNERI 101
           +A S+   + + + N + RTT+KYN+ I
Sbjct: 143 IANSKGIERVITLINNKFRTTSKYNQII 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,818,261
Number of Sequences: 5004
Number of extensions: 27252
Number of successful extensions: 90
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)