Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP23_F_L08
(869 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0424 + 17444261-17444665,17445974-17446367,17447367-174474... 31 0.91
04_04_1105 - 30942735-30942791,30943116-30943466,30943670-309437... 31 0.91
06_01_0964 - 7417158-7417517,7417596-7417868,7418400-7418810,741... 30 2.1
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892... 30 2.1
08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165 30 2.8
06_01_0078 - 628946-629524,629620-629684,629814-629935,630042-63... 29 3.7
06_01_0438 + 3110703-3111945,3112486-3113057 29 6.4
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 8.5
06_03_0218 + 18219956-18220555 28 8.5
03_06_0149 - 31987183-31987630,31987813-31987874 28 8.5
03_04_0061 - 16949038-16950006 28 8.5
01_07_0382 + 43188478-43190919 28 8.5
>09_04_0424 +
17444261-17444665,17445974-17446367,17447367-17447425,
17447507-17447637,17447737-17447833,17447936-17448100
Length = 416
Score = 31.5 bits (68), Expect = 0.91
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +3
Query: 768 FAPSWAVCTNPPFSPTAAPYPVTIVLSXPGKH 863
F P AV PP P AAP PV + + P H
Sbjct: 67 FVPFHAVGPPPPPQPRAAPPPVAVAMGSPAPH 98
>04_04_1105 -
30942735-30942791,30943116-30943466,30943670-30943762,
30943869-30944072,30944155-30944399,30945019-30945877,
30946070-30946936,30947113-30947562
Length = 1041
Score = 31.5 bits (68), Expect = 0.91
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Frame = +2
Query: 674 RLPDTCPPFSLREAWRFLIA-----HAVGISVRCRSVRSK 778
RL D C P L+E WRFL+A A S RC++ R+K
Sbjct: 849 RLAD-CDPRVLKEQWRFLVAFWNTEEAQAASARCKASRAK 887
>06_01_0964 -
7417158-7417517,7417596-7417868,7418400-7418810,
7419270-7419347
Length = 373
Score = 30.3 bits (65), Expect = 2.1
Identities = 25/85 (29%), Positives = 39/85 (45%)
Frame = +1
Query: 529 RFSIGSAPLNEHHKNRRSSQRWRNPTGL*RYQAFPPGSSLVRSPVPTLPLTGYLSAFLPS 708
+F + P N+ ++ RS ++ + T + + G SL + LP + Y S P
Sbjct: 93 QFFLNDLPGNDFNQLFRSLEKIKTSTTM-----YHKGDSLPSYYISGLPKS-YYSRLFPR 146
Query: 709 GSVALSHSSRCRYLSSV*VRSLQAG 783
SV L HSS C + S L+AG
Sbjct: 147 QSVHLFHSSYCLHWRSQVPEGLEAG 171
>01_06_0565 +
30287253-30287502,30287522-30289010,30289133-30289277,
30289679-30289729
Length = 644
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +3
Query: 765 PFAPSWAVCTNP-PFSPTAAPYPVTIVLSXPG 857
P P+ T P PF P AP+P + LS PG
Sbjct: 556 PLVPTPPSSTTPMPFDPNTAPFPCSYWLSHPG 587
>08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165
Length = 430
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -3
Query: 639 SRGKRLVSL*SCRVSPPLT*ASIFVMLVQGGGAYGKTPAT 520
SRGK L+S + R PP + + V+ + GGG G P T
Sbjct: 25 SRGKSLLSPSTPRSPPPSYGSIVTVLSIDGGGVRGIIPGT 64
>06_01_0078 -
628946-629524,629620-629684,629814-629935,630042-630129,
630508-630819,630908-632189,632296-632784
Length = 978
Score = 29.5 bits (63), Expect = 3.7
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = -1
Query: 842 DDSYRIRRSGRAERGVRAHSPAWSERTYTEL-RYLQ 738
D++ R+RR R + G AH+P W RT ++ RY++
Sbjct: 57 DEAQRLRRERRGQ-GSGAHTPRWVRRTPDQMARYVE 91
>06_01_0438 + 3110703-3111945,3112486-3113057
Length = 604
Score = 28.7 bits (61), Expect = 6.4
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -2
Query: 157 HCILVVVCPNSSMYLIMSGSN*PSXKGRSAAAVP 56
HC + +VC +S+ L++S P+ ++AA+P
Sbjct: 64 HCFVEIVCADSAGRLLLSAKPRPAPAATTSAALP 97
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +3
Query: 303 NESAN---ARGEAVCVLGALPLPRSLTRCAR 386
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
>06_03_0218 + 18219956-18220555
Length = 199
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -3
Query: 711 SRREKGGQVSG--KRQGRNRRAHEGASRGKRLVS 616
+RRE+ + +G KR+GR R G RGKR S
Sbjct: 106 ARRERRLEAAGAEKREGRRRGGSSGGLRGKRRAS 139
>03_06_0149 - 31987183-31987630,31987813-31987874
Length = 169
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 732 AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRG 631
A+ + H R + + +R+GR R AHEG G
Sbjct: 76 AVARGHGLERLQEAGIEAERRGRRRNAHEGIKIG 109
>03_04_0061 - 16949038-16950006
Length = 322
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 606 RTIKIPGVSPWKLPRALSCSDPAAYRIPVRLSPFGKRGA 722
RT+K PG+ ++PRA+ + P Y VR + +R A
Sbjct: 255 RTMKGPGLGGARVPRAVFRASPRRYYAAVRTARKARRSA 293
>01_07_0382 + 43188478-43190919
Length = 813
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 761 RSVRSKLGCVHEPPVQPDRCALSGNYRL 844
R + S C+H PP+QP R + S + L
Sbjct: 33 RRLSSTTACLHPPPLQPPRASASASASL 60
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,861,829
Number of Sequences: 37544
Number of extensions: 541045
Number of successful extensions: 1811
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1806
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -