Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_L07
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2 ...    43   5e-05
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    38   0.003
SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1||...    30   0.38 
SPBC4C3.03 |||homoserine kinase |Schizosaccharomyces pombe|chr 2...    27   2.7  
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su...    27   4.7  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    26   6.2  

>SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 437

 Score = 43.2 bits (97), Expect = 5e-05
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = +3

Query: 306 KCLICIDYDLCATCYESGATTNQHTTEHPMQCILSRS--DFDLYYGGE 443
           +C+ C+D+DLC  C+ SGA+   H   HP + I + S   FD  +G +
Sbjct: 22  RCVECVDFDLCIPCFTSGASLGTHHPSHPYRIIETNSYPIFDENWGAD 69


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 37.5 bits (83), Expect = 0.003
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 300 RYKCLICIDYDLCATCYESGATTNQH 377
           RYKC +C DYD+C +C    + +N H
Sbjct: 147 RYKCSVCDDYDICESCLTDNSHSNTH 172



 Score = 35.1 bits (77), Expect = 0.013
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +3

Query: 288 LXGRRYKCLICIDYDLCATC 347
           + G R+ CL+C DYDLC++C
Sbjct: 220 IVGPRFHCLVCEDYDLCSSC 239



 Score = 26.6 bits (56), Expect = 4.7
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 303 YKCLICIDYDLCATCYESGA 362
           + C  C D+D+C  CY   A
Sbjct: 74  FHCTKCFDFDVCRDCYAKQA 93


>SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 393

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 24/88 (27%), Positives = 34/88 (38%)
 Frame = +3

Query: 414 SDFDLYYGGEALTLEQSQAYTCPFCNRMGFTDTGLMEHVTAEHADTTLAVVCPVCASMPG 593
           SD  LY   + LT  ++    C      G T   L    +  H D ++ +V P+CA    
Sbjct: 260 SDIMLYVDSKYLTTVKADGL-C-ISTPTGSTAYSLAAGGSLCHPDISVMIVSPICAHSLS 317

Query: 594 GEPNFVTDDFAGHLTLEHRTGSXDLISF 677
             P  V D  A H+ +         ISF
Sbjct: 318 LRPIHVPDSMALHVVIPQDAQQSSWISF 345


>SPBC4C3.03 |||homoserine kinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 338

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 17/44 (38%), Positives = 20/44 (45%)
 Frame = +1

Query: 577 VHQCQVVSLISSRMTLLAILHSSTGPGLXISSLFWMNPVVSGMA 708
           VHQ    SLI     +LA L+  T PGL    L    P V  +A
Sbjct: 256 VHQPYRASLIPGLQNILATLNPDTQPGLCGICLSGAGPTVLALA 299


>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
           subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 462 SQAYTCPFCNRMGFTDTGLMEHVTAE 539
           S+ Y CPFCN+  F+   ++  VT E
Sbjct: 133 SKGYVCPFCNKK-FSSLDVLSLVTNE 157


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 450 TLEQSQAYTCPFCNRMGFTDTGLMEHVTAEH 542
           T E  +A++C FCNR       L  HV   H
Sbjct: 49  THENVKAFSCSFCNRAFARSDVLNRHVQQMH 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,384,663
Number of Sequences: 5004
Number of extensions: 69256
Number of successful extensions: 156
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)