Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_L07
         (886 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    32   0.006
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    30   0.033
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      27   0.23 
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              23   4.9  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   4.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   4.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   4.9  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   6.5  

>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 32.3 bits (70), Expect = 0.006
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
 Frame = +3

Query: 390 PMQCILSRSDFDLYYGGEALTL---EQSQA-YTCPFCNRMGFTDTGLMEHVTAEH 542
           P +C   R +F  YY  +       EQS   Y C FCNR   T   L  H + +H
Sbjct: 5   PQECPYCRRNFSCYYSLKRHFQDKHEQSDTLYVCEFCNRRYRTKNSLTTHKSLQH 59



 Score = 27.9 bits (59), Expect = 0.13
 Identities = 19/76 (25%), Positives = 32/76 (42%)
 Frame = +3

Query: 477 CPFCNRMGFTDTGLMEHVTAEHADTTLAVVCPVCASMPGGEPNFVTDDFAGHLTLEHRTG 656
           CP+C R       L  H   +H  +    VC  C      + +  T     H +L+HR G
Sbjct: 8   CPYCRRNFSCYYSLKRHFQDKHEQSDTLYVCEFCNRRYRTKNSLTT-----HKSLQHR-G 61

Query: 657 SXDLISFLDEPSGIRH 704
           S  ++  L + + I++
Sbjct: 62  SSGMLKRLLKTTAIKN 77


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 29.9 bits (64), Expect = 0.033
 Identities = 16/69 (23%), Positives = 29/69 (42%)
 Frame = +3

Query: 471 YTCPFCNRMGFTDTGLMEHVTAEHADTTLAVVCPVCASMPGGEPNFVTDDFAGHLTLEHR 650
           +TC  C ++  +   L  HV  +HA+      C +C  +     + +T  +  H   + R
Sbjct: 6   FTCQLCGKVLCSKASLKRHVADKHAERQEEYRCVICERVYCSRNSLMTHIYTYH---KSR 62

Query: 651 TGSXDLISF 677
            G  D+  F
Sbjct: 63  PGDIDIKFF 71



 Score = 25.0 bits (52), Expect = 0.93
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +3

Query: 456 EQSQAYTCPFCNRMGFTDTGLMEHVTAEH 542
           E+ + Y C  C R+  +   LM H+   H
Sbjct: 31  ERQEEYRCVICERVYCSRNSLMTHIYTYH 59


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 27.1 bits (57), Expect = 0.23
 Identities = 11/36 (30%), Positives = 15/36 (41%)
 Frame = +3

Query: 471 YTCPFCNRMGFTDTGLMEHVTAEHADTTLAVVCPVC 578
           YTC  C +   T   L  H   +H     + VC +C
Sbjct: 372 YTCDVCGKTLSTKLTLKRHKEQQHFQPLNSAVCALC 407


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 465 QAYTCPFCNRMG 500
           +AYTCP C   G
Sbjct: 71  RAYTCPICGACG 82


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +3

Query: 525 HVTAEHADTTLAVVCPVCA 581
           H+     DTT  VVC  C+
Sbjct: 342 HMLGGRTDTTYRVVCDACS 360


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = +3

Query: 441 EALTLEQSQAYTCPFCNRMGFTDTGLMEHVTAE-HADTT 554
           EA+TLE +  Y C   N  G     +   VTA  H + T
Sbjct: 298 EAVTLEDNGIYRCSASNPGGEASAEIRLIVTAPLHVEVT 336


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = +3

Query: 441 EALTLEQSQAYTCPFCNRMGFTDTGLMEHVTAE-HADTT 554
           EA+TLE +  Y C   N  G     +   VTA  H + T
Sbjct: 298 EAVTLEDNGIYRCSASNPGGEASAEIRLIVTAPLHVEVT 336


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 316 FASITTCALLATSPAL 363
           F +ITTC ++  +PA+
Sbjct: 56  FGNITTCTVIIKNPAM 71


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 239,323
Number of Sequences: 438
Number of extensions: 5056
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)