Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_L05
         (807 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.36 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    25   1.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   5.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.8  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.2 bits (55), Expect = 0.36
 Identities = 12/30 (40%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
 Frame = +3

Query: 636 PPPPPXXXPX--KXXPPPXXXXXPPXGGPP 719
           P P P   P   +   PP     PP GGPP
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = -3

Query: 718 GGPPXGGXXXKXGGGXFFXGXXXGGGGG 635
           G    GG      GG    G   GGGGG
Sbjct: 23  GSSSAGGVVTGASGGSIVVGANNGGGGG 50


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 483 PPPPPPXXXG 512
           PPPPPP   G
Sbjct: 343 PPPPPPSSSG 352


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 483  PPPPPPXXXG 512
            PPPPPP   G
Sbjct: 1356 PPPPPPPSSG 1365


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,608
Number of Sequences: 438
Number of extensions: 4314
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)