Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_L04
         (1073 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    33   0.51 
04_04_0198 + 23502657-23502900,23505228-23505298,23505690-235057...    31   1.6  
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076           30   2.7  

>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 32.7 bits (71), Expect = 0.51
 Identities = 24/91 (26%), Positives = 27/91 (29%)
 Frame = -1

Query: 773  LPAXVXLVPPXPPXAGXSGVXHXPGPASRXPXXXPPGXGAXXXXXRLXRRPAXGXXXGXP 594
            LP  +  VPP PP  G  G    P PA       PP             R   G   G P
Sbjct: 1141 LPEGIGGVPPPPPVGGLGGPPAPPPPAGFRGGTPPPNAHGGVAPPPPPPR-GHGGVGGPP 1199

Query: 593  XXXXGPSPXARTAVXSGVAXGTXPXXAPSAP 501
                 P+P     V  G          P+ P
Sbjct: 1200 TPPGAPAPPMPPGVPGGPPPPPGGRGLPAPP 1230


>04_04_0198 +
           23502657-23502900,23505228-23505298,23505690-23505727,
           23505905-23507693
          Length = 713

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 18/67 (26%), Positives = 22/67 (32%)
 Frame = -1

Query: 770 PAXVXLVPPXPPXAGXSGVXHXPGPASRXPXXXPPGXGAXXXXXRLXRRPAXGXXXGXPX 591
           P  +    P PP +  +G    P P +  P   PP  GA           A     G P 
Sbjct: 626 PPMMANAAPVPPPSMANGAGPVPPPIAVAPPPAPPIAGAAPPPPMANGAAAAAPPGGNPA 685

Query: 590 XXXGPSP 570
              GP P
Sbjct: 686 PPAGPQP 692


>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
          Length = 906

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 26/83 (31%), Positives = 28/83 (33%)
 Frame = -1

Query: 749 PPXPPXAGXSGVXHXPGPASRXPXXXPPGXGAXXXXXRLXRRPAXGXXXGXPXXXXGPSP 570
           PP PP    S   H  G     P   PPG GA          PA       P     PSP
Sbjct: 284 PPAPPPLPPSH-HHHHGHHPPPPHPLPPGAGAGAGTGAPPPPPAHPAAPAPP--PPAPSP 340

Query: 569 XARTAVXSGVAXGTXPXXAPSAP 501
            A     +G   G  P   P+AP
Sbjct: 341 SA-----AGAGSGPPPPPPPAAP 358


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,137,884
Number of Sequences: 37544
Number of extensions: 190017
Number of successful extensions: 328
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 321
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3199551704
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)