Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_L03
         (919 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr...    30   0.53 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   8.6  

>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 29.9 bits (64), Expect = 0.53
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 626 APPP*RASXXSTLKSXVAKPDRTIKXPGVSPXXLPRAPP 742
           APPP RA+   +  +  A P RT+  P  +P  + +APP
Sbjct: 8   APPPRRAAPARSASTAAALPPRTMAPP-PAPSRVQQAPP 45


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 20/68 (29%), Positives = 21/68 (30%), Gaps = 4/68 (5%)
 Frame = +1

Query: 715 PXXXPXCAPXFRPCRLPXXLSXFPPSGSXGAXPXPP----XXGXPXRCXXXPPXXGAXCP 882
           P   P   P   P  LP       P G+  A P PP        P      PP   A  P
Sbjct: 416 PVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPA-AP 474

Query: 883 XPPXXXXP 906
            PP    P
Sbjct: 475 APPPAPAP 482


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,085,501
Number of Sequences: 5004
Number of extensions: 26512
Number of successful extensions: 41
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)