Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_L03
         (919 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1310 + 29238644-29240260                                         31   1.3  
02_05_0686 - 30900748-30902167,30903442-30904742                       31   1.7  
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863...    30   3.0  

>06_03_1310 + 29238644-29240260
          Length = 538

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 16/43 (37%), Positives = 16/43 (37%)
 Frame = +1

Query: 763 PXXLSXFPPSGSXGAXPXPPXXGXPXRCXXXPPXXGAXCPXPP 891
           P   S  PP G  G  P PP  G        PP  G   P PP
Sbjct: 480 PPSSSWSPPQGGGGKLPFPPVHGVAY-SSPPPPPSGDKLPFPP 521


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 20/60 (33%), Positives = 21/60 (35%)
 Frame = +1

Query: 736 APXFRPCRLPXXLSXFPPSGSXGAXPXPPXXGXPXRCXXXPPXXGAXCPXPPXXXXPVGP 915
           AP   P   P   +  PP     A P PP  G P      PP  G   P PP    P  P
Sbjct: 312 APPPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPP----PPPPAKGPPPPPPPKGPSPPPP 367


>03_02_0455 -
           8630543-8630893,8630994-8631068,8631149-8631223,
           8631332-8631397,8631891-8631967,8632659-8633070
          Length = 351

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 15/52 (28%), Positives = 18/52 (34%)
 Frame = +1

Query: 715 PXXXPXCAPXFRPCRLPXXLSXFPPSGSXGAXPXPPXXGXPXRCXXXPPXXG 870
           P   P   P   P  +P  +   P  G+    P PP    P R    PP  G
Sbjct: 276 PPQAPPPPPPNAPMGMPPRIPPPPVGGTQPPPPPPPLANGPPRSIPPPPMTG 327


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,947,964
Number of Sequences: 37544
Number of extensions: 248953
Number of successful extensions: 876
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2612387020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)