Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP23_F_L03
(919 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical pr... 33 0.22
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 31 1.5
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 1.5
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 1.5
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 1.5
AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical ... 30 2.0
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 3.5
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 3.5
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 3.5
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 4.7
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 29 4.7
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 4.7
>Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical
protein F45B8.3 protein.
Length = 241
Score = 33.5 bits (73), Expect = 0.22
Identities = 21/64 (32%), Positives = 21/64 (32%)
Frame = +1
Query: 715 PXXXPXCAPXFRPCRLPXXLSXFPPSGSXGAXPXPPXXGXPXRCXXXPPXXGAXCPXPPX 894
P P C P P LP PP S P P P C PP A C PP
Sbjct: 74 PRPSPSCCPYVPPAPLPPP----PPPASPCCGPSP----VPAPCCPPPPAPAAPCCPPPP 125
Query: 895 XXXP 906
P
Sbjct: 126 PPTP 129
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/44 (36%), Positives = 16/44 (36%)
Frame = +1
Query: 784 PPSGSXGAXPXPPXXGXPXRCXXXPPXXGAXCPXPPXXXXPVGP 915
PP G P PP G P PP P PP PV P
Sbjct: 97 PPPMMGGIPPPPPMFGAPP--PPPPPSGLGVAPQPPRPKTPVNP 138
Score = 29.1 bits (62), Expect = 4.7
Identities = 17/51 (33%), Positives = 19/51 (37%)
Frame = +1
Query: 763 PXXLSXFPPSGSXGAXPXPPXXGXPXRCXXXPPXXGAXCPXPPXXXXPVGP 915
P + PP + G P PP G PP GA P PP V P
Sbjct: 80 PGGIPPPPPMFAGGIPPPPPMMGG---IPPPPPMFGAPPPPPPPSGLGVAP 127
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/46 (34%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Frame = +1
Query: 784 PPSGSXGAXPXPPXXG--XPXRCXXXPPXXGAXCPXPPXXXXPVGP 915
PP G+ P PP G P R PP P PP P P
Sbjct: 247 PPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 292
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/48 (33%), Positives = 19/48 (39%)
Frame = +1
Query: 763 PXXLSXFPPSGSXGAXPXPPXXGXPXRCXXXPPXXGAXCPXPPXXXXP 906
P + PP G+ P PP G P PP G+ P PP P
Sbjct: 265 PPPRTGSPPPPPTGSPPPPPAGGSPP-----PPRAGSPPPPPPPRGSP 307
Score = 28.3 bits (60), Expect = 8.1
Identities = 20/81 (24%), Positives = 25/81 (30%), Gaps = 2/81 (2%)
Frame = +1
Query: 679 ETRQDYKDXRRFPXXXPXCAPXFRPCRLPXXLSXFPPSGSXGAXPXPPXXGXPXR--CXX 852
+T+ ++ R+ P P P S PP P PP G P
Sbjct: 220 QTQNGFRGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGS 279
Query: 853 XPPXXGAXCPXPPXXXXPVGP 915
PP P PP P P
Sbjct: 280 PPPPPAGGSPPPPRAGSPPPP 300
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/46 (34%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Frame = +1
Query: 784 PPSGSXGAXPXPPXXG--XPXRCXXXPPXXGAXCPXPPXXXXPVGP 915
PP G+ P PP G P R PP P PP P P
Sbjct: 268 PPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 313
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/48 (33%), Positives = 19/48 (39%)
Frame = +1
Query: 763 PXXLSXFPPSGSXGAXPXPPXXGXPXRCXXXPPXXGAXCPXPPXXXXP 906
P + PP G+ P PP G P PP G+ P PP P
Sbjct: 286 PPPRTGSPPPPPTGSPPPPPAGGSPP-----PPRAGSPPPPPPPRGSP 328
Score = 28.3 bits (60), Expect = 8.1
Identities = 20/81 (24%), Positives = 25/81 (30%), Gaps = 2/81 (2%)
Frame = +1
Query: 679 ETRQDYKDXRRFPXXXPXCAPXFRPCRLPXXLSXFPPSGSXGAXPXPPXXGXPXR--CXX 852
+T+ ++ R+ P P P S PP P PP G P
Sbjct: 241 QTQNGFRGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGS 300
Query: 853 XPPXXGAXCPXPPXXXXPVGP 915
PP P PP P P
Sbjct: 301 PPPPPAGGSPPPPRAGSPPPP 321
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/46 (34%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Frame = +1
Query: 784 PPSGSXGAXPXPPXXG--XPXRCXXXPPXXGAXCPXPPXXXXPVGP 915
PP G+ P PP G P R PP P PP P P
Sbjct: 253 PPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 298
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/48 (33%), Positives = 19/48 (39%)
Frame = +1
Query: 763 PXXLSXFPPSGSXGAXPXPPXXGXPXRCXXXPPXXGAXCPXPPXXXXP 906
P + PP G+ P PP G P PP G+ P PP P
Sbjct: 271 PPPRTGSPPPPPTGSPPPPPAGGSPP-----PPRAGSPPPPPPPRGSP 313
Score = 28.3 bits (60), Expect = 8.1
Identities = 20/81 (24%), Positives = 25/81 (30%), Gaps = 2/81 (2%)
Frame = +1
Query: 679 ETRQDYKDXRRFPXXXPXCAPXFRPCRLPXXLSXFPPSGSXGAXPXPPXXGXPXR--CXX 852
+T+ ++ R+ P P P S PP P PP G P
Sbjct: 226 QTQNGFRGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGS 285
Query: 853 XPPXXGAXCPXPPXXXXPVGP 915
PP P PP P P
Sbjct: 286 PPPPPAGGSPPPPRAGSPPPP 306
>AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical
protein ZC123.1 protein.
Length = 730
Score = 30.3 bits (65), Expect = 2.0
Identities = 20/58 (34%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Frame = +1
Query: 727 PXCAPXFRPC---RLPXXLSXFPPSGSXGAXPXPPXXGXPXRCXXXPPXXGAXCPXPP 891
P C P +PC R P G+ G P PP P R PP A P PP
Sbjct: 94 PNCCP--KPCCRGRRPEYEEYEDEEGNPGGVPAPPN---PPRTCCPPPTPAAPPPPPP 146
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.5 bits (63), Expect = 3.5
Identities = 13/41 (31%), Positives = 16/41 (39%)
Frame = +1
Query: 784 PPSGSXGAXPXPPXXGXPXRCXXXPPXXGAXCPXPPXXXXP 906
P + + G+ PP G P PP G P PP P
Sbjct: 696 PSTSAGGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLP 736
Score = 28.3 bits (60), Expect = 8.1
Identities = 17/49 (34%), Positives = 18/49 (36%), Gaps = 6/49 (12%)
Frame = +1
Query: 784 PPSG----SXGAXPXPPXXGXPXRC--XXXPPXXGAXCPXPPXXXXPVG 912
PP G + G P PP G P PP CP PP P G
Sbjct: 731 PPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGG 779
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.5 bits (63), Expect = 3.5
Identities = 13/41 (31%), Positives = 16/41 (39%)
Frame = +1
Query: 784 PPSGSXGAXPXPPXXGXPXRCXXXPPXXGAXCPXPPXXXXP 906
P + + G+ PP G P PP G P PP P
Sbjct: 696 PSTSAGGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLP 736
Score = 28.3 bits (60), Expect = 8.1
Identities = 17/49 (34%), Positives = 18/49 (36%), Gaps = 6/49 (12%)
Frame = +1
Query: 784 PPSG----SXGAXPXPPXXGXPXRC--XXXPPXXGAXCPXPPXXXXPVG 912
PP G + G P PP G P PP CP PP P G
Sbjct: 731 PPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGG 779
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.5 bits (63), Expect = 3.5
Identities = 13/41 (31%), Positives = 16/41 (39%)
Frame = +1
Query: 784 PPSGSXGAXPXPPXXGXPXRCXXXPPXXGAXCPXPPXXXXP 906
P + + G+ PP G P PP G P PP P
Sbjct: 279 PSTSAGGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLP 319
Score = 28.3 bits (60), Expect = 8.1
Identities = 17/49 (34%), Positives = 18/49 (36%), Gaps = 6/49 (12%)
Frame = +1
Query: 784 PPSG----SXGAXPXPPXXGXPXRC--XXXPPXXGAXCPXPPXXXXPVG 912
PP G + G P PP G P PP CP PP P G
Sbjct: 314 PPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGG 362
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.1 bits (62), Expect = 4.7
Identities = 16/43 (37%), Positives = 16/43 (37%)
Frame = +1
Query: 784 PPSGSXGAXPXPPXXGXPXRCXXXPPXXGAXCPXPPXXXXPVG 912
PP S G P PP P R P G P PP P G
Sbjct: 288 PPPPSSGMWPPPPPP-PPGRTPGPPGMPGMPPPPPPSRFGPPG 329
Score = 28.3 bits (60), Expect = 8.1
Identities = 19/73 (26%), Positives = 26/73 (35%)
Frame = +2
Query: 572 PAKGQEP*KGXVAGVXP*APPP*RASXXSTLKSXVAKPDRTIKXPGVSPXXLPRAPPXSD 751
P G+ P + G+ P PPP + P ++ PG P P P +
Sbjct: 302 PPPGRTPGPPGMPGMPP--PPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAG 359
Query: 752 PAAYRXXCPXSPP 790
P Y P PP
Sbjct: 360 PGMYPPPPPSRPP 372
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 29.1 bits (62), Expect = 4.7
Identities = 20/66 (30%), Positives = 21/66 (31%), Gaps = 1/66 (1%)
Frame = +1
Query: 715 PXXXPXCAPXFRPCRLPXXLSX-FPPSGSXGAXPXPPXXGXPXRCXXXPPXXGAXCPXPP 891
P P CAP PC P F P P PP P C PP + P
Sbjct: 32 PPPPPMCAPPPLPCPPPPICPPQFCPPPPM--CPPPPPPPPPPMCPPPPPPMPSYSPCQS 89
Query: 892 XXXXPV 909
PV
Sbjct: 90 YAPAPV 95
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.1 bits (62), Expect = 4.7
Identities = 16/43 (37%), Positives = 16/43 (37%)
Frame = +1
Query: 784 PPSGSXGAXPXPPXXGXPXRCXXXPPXXGAXCPXPPXXXXPVG 912
PP S G P PP P R P G P PP P G
Sbjct: 298 PPPPSSGMWPPPPPP-PPGRTPGPPGMPGMPPPPPPSRFGPPG 339
Score = 28.3 bits (60), Expect = 8.1
Identities = 19/73 (26%), Positives = 26/73 (35%)
Frame = +2
Query: 572 PAKGQEP*KGXVAGVXP*APPP*RASXXSTLKSXVAKPDRTIKXPGVSPXXLPRAPPXSD 751
P G+ P + G+ P PPP + P ++ PG P P P +
Sbjct: 312 PPPGRTPGPPGMPGMPP--PPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAG 369
Query: 752 PAAYRXXCPXSPP 790
P Y P PP
Sbjct: 370 PGMYPPPPPSRPP 382
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,279,669
Number of Sequences: 27780
Number of extensions: 181971
Number of successful extensions: 616
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2349764032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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