Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_L01
         (884 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0129 + 17520753-17520842,17521651-17521741,17521887-175220...   104   1e-22
08_01_0036 - 267236-268165,268255-268299,268485-268574,269485-26...    29   3.8  
02_02_0146 - 7171656-7172044,7172383-7175008                           29   6.6  
02_01_0385 + 2783387-2783695,2784149-2785082,2785206-2785309,278...    28   8.7  

>03_04_0129 +
           17520753-17520842,17521651-17521741,17521887-17522070,
           17522149-17522224
          Length = 146

 Score =  104 bits (249), Expect = 1e-22
 Identities = 44/87 (50%), Positives = 63/87 (72%)
 Frame = +2

Query: 230 WFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALK 409
           W+Y R A+I R IY+R  +GV    KI+GGR+RNG  P HFC+SSG+I+R  LQ L+ + 
Sbjct: 55  WYYTRAASIARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMG 114

Query: 410 LVEKVQDGGRILTTQGRRDLDRIAAXV 490
           +++    GGR++T+QGRRDLD++A  V
Sbjct: 115 IIDVDPKGGRLITSQGRRDLDQVAGRV 141



 Score = 67.7 bits (158), Expect = 1e-11
 Identities = 29/46 (63%), Positives = 38/46 (82%)
 Frame = +1

Query: 88  TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDP 225
           TVKDV   + VK  +AHLK++GK+++PE +D+VKTARFKEL PYDP
Sbjct: 8   TVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDP 53


>08_01_0036 -
           267236-268165,268255-268299,268485-268574,269485-269805,
           269895-270098,271532-271664,271810-271881,273106-273168,
           273252-275034,275169-275217
          Length = 1229

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 19/51 (37%), Positives = 26/51 (50%)
 Frame = +3

Query: 222 PXIGSMCVVLPSFVIFTFAHLLESRLSPRSLVGANVMELHLHISAGHQAVL 374
           P +G++ + LP F+       +   LSPR L+ A V EL L    GH A L
Sbjct: 160 PELGNLVLALPGFLSLVAVRSIPQELSPR-LLWAPVFEL-LADHRGHPAFL 208


>02_02_0146 - 7171656-7172044,7172383-7175008
          Length = 1004

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +1

Query: 193 ARFKELAPYDPXLVLCALCCHPSSYLHSLTC-WSQDCHQD 309
           A  + LA  D  L   +LCC   S +H  TC WSQ    D
Sbjct: 586 AALQTLAYEDSFLDNPSLCCQSESGMHIRTCPWSQSMSHD 625


>02_01_0385 +
           2783387-2783695,2784149-2785082,2785206-2785309,
           2785402-2785486,2785517-2787578,2787732-2787753,
           2788157-2788327,2791473-2791517,2792558-2793874,
           2793962-2794012,2794090-2794188,2794352-2794504,
           2794554-2794571
          Length = 1789

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -3

Query: 195 SCLYKIHVLRYLDFARFF*VS-SDSFNNLVLFNILYCDGTHL 73
           S +YK+ +LRYLD +     S S SFN+L+    L    T+L
Sbjct: 550 SSVYKLKLLRYLDASSLRISSFSKSFNHLLNLQALILSNTYL 591


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,128,809
Number of Sequences: 37544
Number of extensions: 282445
Number of successful extensions: 772
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)