Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_K24
         (898 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.2  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    24   1.6  
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    27   3.6  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   3.6  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = -2

Query: 897 PXXPXGXGXFFXXXKXPPPPPPPXXXKKK 811
           P  P   G  F     PPPPPPP   KK+
Sbjct: 10  PPPPPPPG--FEPPSQPPPPPPPGYVKKR 36



 Score = 25.8 bits (54), Expect = 8.4
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = -2

Query: 897 PXXPXGXGXFFXXXKXPPPPPPPXXXKKK 811
           P  P     F    + PPPPPP    K+K
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPPGYVKKRK 37


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 23.8 bits (49), Expect(2) = 1.6
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -2

Query: 849 PPPPPPP 829
           PPPPPPP
Sbjct: 761 PPPPPPP 767



 Score = 22.6 bits (46), Expect(2) = 1.6
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 855 KXPPPPPP 832
           K PPPPPP
Sbjct: 730 KSPPPPPP 737


>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1095

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -2

Query: 165 EDEG*DLCEIHCKFM*IQTRTLRHKRRCTDHLMCNYQESKS*GIPY 28
           E +G +   +H + + I+T TL  K   T+ L+C   E K+   PY
Sbjct: 656 EQDGWEFIPVHGQQVGIRTSTLEDKCTATEMLVCYAAELKADFDPY 701


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -2

Query: 849  PPPPPPPXXXKKK 811
            PPPPPPP   +KK
Sbjct: 1096 PPPPPPPAEVEKK 1108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,377,406
Number of Sequences: 5004
Number of extensions: 35334
Number of successful extensions: 179
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)