Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP23_F_K20
(870 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|ch... 28 2.0
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 27 2.6
SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|c... 27 2.6
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon... 27 3.5
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 27 4.6
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste... 27 4.6
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 26 6.1
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 26 6.1
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy... 26 6.1
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 26 6.1
SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|... 26 6.1
>SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 411
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +3
Query: 93 PLQTNHYLYNYTSEKMLKYLIFVYLLMQVNTSPGNVTNREANDDME 230
PL+ + Y+S++ LK IFV+ L++ S NR +DD++
Sbjct: 358 PLEHKAFFQKYSSKRFLKASIFVHQLVRQRYS----VNRTDDDDLQ 399
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 27.5 bits (58), Expect = 2.6
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = +1
Query: 550 WDESLGKIWQPVPYYSVPLN---EDYLRYFSNCDRFVELM 660
WDE+L K W + Y +P E +LR F+ E++
Sbjct: 160 WDETLFKAWSAIVYTLIPNTPTLESHLREFAKAAEAAEVI 199
>SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 285
Score = 27.5 bits (58), Expect = 2.6
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +1
Query: 358 TSAKEGHTKSASSSVSATDPRVRKSYPKST*RMRFSFRSTDKD-RTKMT 501
T+ K H S S V + + K YP ST R S+ +KD +T +T
Sbjct: 61 TNGKNEHETSCRSVVLYRNSKSAKRYPLSTKCARISYMQGNKDTKTALT 109
>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
of oxoglutarate dehydrogenase complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 27.1 bits (57), Expect = 3.5
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +1
Query: 364 AKEGHTKSASSSVSATDPRVRKSYPKST*RMRFSFRSTDKDRTKMTAL 507
AKE S + ++P V++S PK+T R S S ++DR KM +
Sbjct: 182 AKEPEFSSPKPKPAKSEP-VKQSKPKATETARPSSFSRNEDRVKMNRM 228
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 26.6 bits (56), Expect = 4.6
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Frame = -1
Query: 315 VLPADQKEKA-PHHRELSRHVCSQNKPSTVPC 223
V P DQ K H L+RH +K +PC
Sbjct: 30 VFPCDQCAKRFTRHENLTRHKACHSKAEPIPC 61
>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 26.6 bits (56), Expect = 4.6
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +3
Query: 219 DDMELLMVYFVNRHGERAPDDVELSLSDQQEELKSLTHV 335
D++ELL+ F+ R+G+R V+ S S E L + +H+
Sbjct: 126 DEIELLLEIFIERYGKRWL-SVDYSASQYMELLYTKSHL 163
>SPAC11E3.11c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 26.2 bits (55), Expect = 6.1
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = +1
Query: 574 WQPVPYYSVPLNEDYLRYFSNCDRFVELMRNAKDESIRQEFAPYLDVMQLLSRRTGQNFV 753
WQP P ++P + S + F++L++ DE + L V+ + T + V
Sbjct: 850 WQPQPVNTIPSSLSLGEQLSAFNNFMKLLKKTNDEH-QNLHKEMLVVLSSQPKSTFRRAV 908
Query: 754 EN 759
EN
Sbjct: 909 EN 910
>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 557
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -1
Query: 285 PHHRELSRHVCSQNKPSTVPCHRSPPGW 202
P +S H P+TVP H +PPG+
Sbjct: 315 PFSPNVSSHPHMAFLPATVPTHSAPPGF 342
>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 874
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 342 PEGLTNVGKRRAYQIGKFIRQRYGSEGSKIL 434
P GL ++G R Y I + + Y +G K++
Sbjct: 69 PSGLLHIGHVRVYTISDILSRYYRMKGYKVI 99
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3
Query: 285 ELSLSDQQEELKSLTHVEGPEGLTNVGKRR 374
EL ++ EE + + + GP+GL +VG++R
Sbjct: 1290 ELEVNKVIEEFQLVINQPGPDGLNSVGQQR 1319
>SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 26.2 bits (55), Expect = 6.1
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -3
Query: 676 RPWRSSSAPQTCRSWRSSEDNPRLVEQSSKGLAARSFLV 560
RPW + Q+ R S E +P L++QSS+ L + V
Sbjct: 15 RPWTIINRIQSERYSASYEPSPELLKQSSRRLEQAGYSV 53
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,672,126
Number of Sequences: 5004
Number of extensions: 79381
Number of successful extensions: 239
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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