Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP23_F_K19
(775 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal prot... 95 8e-21
SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal prote... 94 2e-20
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 29 0.56
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc... 28 1.7
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||... 27 2.3
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual 27 3.9
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 26 5.2
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc... 26 6.9
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 26 6.9
>SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal protein
L37a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 94
Score = 95.5 bits (227), Expect = 8e-21
Identities = 40/64 (62%), Positives = 51/64 (79%), Gaps = 2/64 (3%)
Frame = +1
Query: 100 MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSC--K 273
M KRTKKVG+TGKYG RYGASLR+ V+K+EV QH++Y C FCG++ +KR+ GIW C K
Sbjct: 1 MTKRTKKVGVTGKYGVRYGASLRRDVRKIEVQQHSRYQCPFCGRNTVKRTAAGIWCCNGK 60
Query: 274 RCKR 285
CK+
Sbjct: 61 GCKK 64
Score = 26.6 bits (56), Expect = 3.9
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +2
Query: 323 STTAASSCRSAVRRLREV 376
+T AA+S RS +RRLRE+
Sbjct: 74 TTAAATSARSTIRRLREM 91
>SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal protein
L37a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 94
Score = 93.9 bits (223), Expect = 2e-20
Identities = 40/65 (61%), Positives = 50/65 (76%), Gaps = 2/65 (3%)
Frame = +1
Query: 100 MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSC--K 273
M KRTKKVG+TGKYG RYGASLR+ V+K+EV QH++Y C FCG+ +KR+ GIW C K
Sbjct: 1 MTKRTKKVGVTGKYGVRYGASLRRDVRKIEVQQHSRYQCPFCGRLTVKRTAAGIWKCSGK 60
Query: 274 RCKRT 288
C +T
Sbjct: 61 GCSKT 65
Score = 26.6 bits (56), Expect = 3.9
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +2
Query: 323 STTAASSCRSAVRRLREV 376
+T AA+S RS +RRLRE+
Sbjct: 74 TTAAATSARSTIRRLREM 91
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1465
Score = 29.5 bits (63), Expect = 0.56
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +3
Query: 15 YRSHYREFLKILAFFFFSVNFCIGEVYQNGQTYQKGWNYWQI 140
+R H+ +F I FF I ++Y +T GWN++ +
Sbjct: 36 FRPHFSQFWTIWMKFFSIALVIITQIYVGYKTKNIGWNFFSV 77
>SPBC685.09 |orc2|orp2|origin recognition complex subunit
Orc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 27.9 bits (59), Expect = 1.7
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Frame = -3
Query: 320 NXPKASLXXLXVLLHRLQDQMPTQERF---IASLPQNEQVYFACWVTSIFLTIL 168
N P SL + L+H + + ERF +A++ ++ VYF V + +L
Sbjct: 328 NSPSFSLGKIVFLVHNIDGESLIDERFQSALAAIASSKNVYFIASVDHVNFALL 381
>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 27.5 bits (58), Expect = 2.3
Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Frame = -3
Query: 287 VLLHRLQDQMPTQERFIASLPQNEQV--YFACWVTSIFLTILRREAP*RVPYLPV-IPTF 117
+L +L +Q+PT R AS+P QV YF + +A ++P LPV +P +
Sbjct: 32 LLKQKLTEQLPTTFRITASIPHATQVRDYFIEHYYPLIENARTEDA--KIP-LPVSLPWY 88
Query: 116 LVRLAILVNLSDTKVDREKKKS*NLKEFPIVXSVXG 9
+A ++++S +V R+ L+EF ++ + G
Sbjct: 89 PDGMAFMLDIS-KEVIRKSPHLKALQEFLVLETEAG 123
>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 26.6 bits (56), Expect = 3.9
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -3
Query: 242 FIASLPQNEQVYFACWVTS 186
F+A + +NE +FA W TS
Sbjct: 84 FVAHVSENENTFFAIWYTS 102
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +1
Query: 196 QHAKYT-CSFCGKDAMKRSCVGIWSCKRCKR 285
+H K T C C + +K C +W C+ CK+
Sbjct: 15 RHRKITSCRECHR--LKLKCDRVWPCENCKK 43
>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 609
Score = 25.8 bits (54), Expect = 6.9
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 183 LFDHFT*RGTVTCAIFASNSNLFGT 109
+FD FT +T I ASN N FG+
Sbjct: 550 VFDEFTNISNLTSPIEASNGNTFGS 574
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 25.8 bits (54), Expect = 6.9
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -1
Query: 148 VCHICQ*FQPFWYVWPF 98
+ ++ Q FQ WY WPF
Sbjct: 1251 IVYLVQDFQRLWYHWPF 1267
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,498,503
Number of Sequences: 5004
Number of extensions: 29711
Number of successful extensions: 88
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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