Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_K17
         (896 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    66   6e-12
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2...    29   0.68 

>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 66.1 bits (154), Expect = 6e-12
 Identities = 50/144 (34%), Positives = 72/144 (50%), Gaps = 12/144 (8%)
 Frame = +2

Query: 449 DLTSWTSAPAPWARGLAVAAGMAYVGKYFDQAPYR----------VYCLVGDGEAAEGSI 598
           DL   T A  P  +G+A A G+A +GK    A Y            +C +GDG   EG  
Sbjct: 113 DLNIETGA-GPLGQGIASAVGLA-IGKAHSAAVYNKPGFDLFSNYTFCFLGDGCLQEGVS 170

Query: 599 WESLHFASHYKLDNLVVIFDVNRLGQSEPTSLQHQLEVYDARLKAFGLNSL-VVDGH-DV 772
            E+   A H KL NL+ ++D N++     TS+    +V + R +A+G N + V +G  D+
Sbjct: 171 SEACSLAGHLKLSNLIAVWDNNKITIDGATSMSFDEDV-EKRFEAYGWNIVRVANGDTDL 229

Query: 773 TELVKAFDEAASVTGKPTALVAKT 844
             + K F EA S T KPT +  KT
Sbjct: 230 DGIEKGFREAMSCTDKPTLINLKT 253



 Score = 62.5 bits (145), Expect = 8e-11
 Identities = 38/110 (34%), Positives = 57/110 (51%), Gaps = 4/110 (3%)
 Frame = +1

Query: 166 NKLRIDSIVATNASKSGHPTSCASMAEIMSVLFFHTMRYKISAPRDASADRFILSKGHAA 345
           N +R  ++  T  +KSGHP +   +A    VLF   M++  + P+  + DRFILS GHA 
Sbjct: 15  NTIRTLAVDTTAHAKSGHPGAPMGLAPAAHVLFSRIMKFNPAHPKWLNRDRFILSNGHAC 74

Query: 346 PILYAAWAEAGL-FPLDELKNLRKLDSDLEGHP---TPRLNFVDVGTGSL 483
            + Y      G    +++LK  R++ S   GHP    P LN ++ G G L
Sbjct: 75  VLQYIMCHLLGYKLTIEDLKQFRQVGSKTPGHPETHNPDLN-IETGAGPL 123


>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 825

 Score = 29.5 bits (63), Expect = 0.68
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
 Frame = +2

Query: 494 LAVAAGMAYVGKYFDQAPYRVYCLVGDGEAAEG---SIWESLHFASHYKLDNLVVIFDVN 664
           L  A  ++Y G   D+    V C+VGDGEA  G   + W +  F    +   ++ + ++N
Sbjct: 191 LGYALSVSY-GAVLDRPDLIVTCVVGDGEAETGPTATSWHAHKFLDPAESGAVIPVLELN 249

Query: 665 RLGQSEPT 688
               SE T
Sbjct: 250 GYKISERT 257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,181,070
Number of Sequences: 5004
Number of extensions: 60047
Number of successful extensions: 152
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)