Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_K15
         (995 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|...    30   0.44 
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha...    29   0.77 
SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein Yip12|Schiz...    29   1.0  
SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein Yip11|Schiz...    29   1.0  
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc...    28   1.8  
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|...    28   2.4  
SPAC8C9.16c |mug63||TLDc domain protein 1|Schizosaccharomyces po...    26   7.2  

>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 503

 Score = 30.3 bits (65), Expect = 0.44
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 524 DKADIDLAVAAAKKAFHRYSPWXYHGPLLKGR 619
           D+ D+D+AV  A+ AF   +PW       +GR
Sbjct: 58  DEEDVDIAVKVARAAFQTDAPWRKFSSAQRGR 89



 Score = 27.5 bits (58), Expect = 3.1
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 399 KVDVKYTKLFINNEWVDAVSKKTFPTINPQDETVITQVA 515
           K  ++   LFINN+ VD+V        +P  E +I +VA
Sbjct: 17  KTYIQPVGLFINNQHVDSVHGGRVKVYSPSTEKLICEVA 55


>SPAC139.05 |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 493

 Score = 29.5 bits (63), Expect = 0.77
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 405 DVKYTKLFINNEWVDAVSKKTFPTINPQDETVITQVA 515
           D  + + F+  +W+ + + KTF   NP    +I +VA
Sbjct: 14  DKSHAQSFVQGKWISSPNNKTFEVDNPATGEIIGKVA 50


>SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein
           Yip12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -3

Query: 372 SNRSAYPQAYNTSASNRLDYYVP 304
           + RSA+PQ  N SAS  L+Y +P
Sbjct: 23  NQRSAFPQIDNNSASESLEYDIP 45


>SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein
           Yip11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -3

Query: 372 SNRSAYPQAYNTSASNRLDYYVP 304
           + RSA+PQ  N SAS  L+Y +P
Sbjct: 23  NQRSAFPQIDNNSASESLEYDIP 45


>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = +3

Query: 426 FINNEWVDAVSKKTFPTINP-QDETV--ITQVAAXEIRRIL 539
           +I  +WV A S KTF   NP  +ET+  +T ++  E R+ +
Sbjct: 27  YIGGKWVTAASGKTFDVENPGLNETLAPVTDMSVEETRKAI 67


>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -2

Query: 583 GITVECFLXCGDGQINIRLISLAATCVMTVSSCGLMVGKVF 461
           G  +  F+  G   +N++   +A+TC++ + S GLM    F
Sbjct: 189 GCLIGYFIYRGGNVMNLQWFLIASTCILYLISAGLMSKATF 229


>SPAC8C9.16c |mug63||TLDc domain protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 188

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 160 FFSSSRSFLQKPRPPKKPPHY 98
           +F S  +FL K  PPKK  HY
Sbjct: 97  YFGSEETFLWKYFPPKKYVHY 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,192,912
Number of Sequences: 5004
Number of extensions: 57566
Number of successful extensions: 152
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 515273988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)