Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_K06
         (900 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0747 - 5587261-5587356,5587472-5587855,5588133-5588192,558...    31   1.2  
05_06_0186 - 26207298-26208548,26208743-26208853,26209286-262095...    29   3.8  
01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647     28   8.8  

>06_01_0747 -
           5587261-5587356,5587472-5587855,5588133-5588192,
           5588428-5588484,5588663-5588800,5588901-5588966,
           5589234-5589452,5589522-5589737,5589813-5589884,
           5589952-5590205,5590356-5590525,5590840-5591029,
           5592211-5592331,5592838-5592921,5593003-5593365,
           5594530-5594724,5594938-5595933,5596329-5596370
          Length = 1240

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = -1

Query: 441 RXGVKRPSK-PXSAFSRPXALXPXXRXPXPPPP 346
           R     P+K P   F  P A+ P  R P PPPP
Sbjct: 5   RPPASHPAKSPPGGFPTPTAVAPRRRAPPPPPP 37


>05_06_0186 -
           26207298-26208548,26208743-26208853,26209286-26209507,
           26209623-26209658
          Length = 539

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -1

Query: 414 PXSAFSRPXALXPXXRXPXPPPP 346
           P +A  RP  L P  R P PPPP
Sbjct: 17  PTTARRRPLRLLPGNRTPHPPPP 39


>01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647
          Length = 252

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 15/53 (28%), Positives = 21/53 (39%)
 Frame = +3

Query: 570 PKXRGTPKRPEAXPXSIXPTPRXXXKKXHXPFXXSKXXPRXTRIXPXPAXNPP 728
           PK + +P +P+  P    P P     K   P    K  P+  +  P P   PP
Sbjct: 163 PKPKPSPPKPKPGPK---PKPPKPGPKPKPPKPGPKPKPKPPKPGPKPKPKPP 212


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.142    0.486 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,192,083
Number of Sequences: 37544
Number of extensions: 147781
Number of successful extensions: 439
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)