Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_K03
         (906 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_08_0004 + 27518384-27519018,27519147-27519397,27520437-275205...    26   2.0  
01_03_0284 - 14595643-14595663,14595978-14596018,14596379-145967...    29   6.7  
03_06_0628 - 35179951-35180265,35180653-35180889,35180982-351811...    28   8.9  

>11_08_0004 +
           27518384-27519018,27519147-27519397,27520437-27520559,
           27523499-27524529
          Length = 679

 Score = 26.2 bits (55), Expect(2) = 2.0
 Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
 Frame = +3

Query: 30  GNSLRFAQCVSNLSKSNKFPCYNDVEDCLDND--FRCRC 140
           G  +   +C     +  K+PCY     C D +  ++C+C
Sbjct: 292 GGCININECELRREEPTKYPCYGG-SRCYDTEGGYKCKC 329



 Score = 22.6 bits (46), Expect(2) = 2.0
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = +3

Query: 249 GNCLKGLVDLNVLKTEIEEAKPNGALDEVFKKYCDKSAQLKGCISSVLQG 398
           GN L  ++D+ +   E         L ++ K YC+K    KG    V +G
Sbjct: 370 GNILNKMMDIKIFSEE--------ELKKMTKNYCEKRMIGKGYFGKVYKG 411


>01_03_0284 -
           14595643-14595663,14595978-14596018,14596379-14596732,
           14597023-14597494,14597524-14600001
          Length = 1121

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 19/52 (36%), Positives = 26/52 (50%)
 Frame = +3

Query: 276 LNVLKTEIEEAKPNGALDEVFKKYCDKSAQLKGCISSVLQGRASLCRQRLCE 431
           L  LK E+   +    LD+V+ +  DK A+LK C+     G A L   RL E
Sbjct: 260 LQKLKQEVCGKRYLLVLDDVWNRDADKWAKLKTCLVQGGAGSAILTTTRLTE 311


>03_06_0628 -
           35179951-35180265,35180653-35180889,35180982-35181140,
           35181673-35181864,35182696-35182983,35183289-35183342,
           35183561-35183671,35183780-35184011,35184097-35184302
          Length = 597

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -3

Query: 862 LKRSFQRSLIFVMALVLTGKKSDGAIS 782
           LK  F R+ I ++  +L G KSDGA+S
Sbjct: 268 LKNPFVRNWIDLLCFLLAGVKSDGALS 294


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,877,937
Number of Sequences: 37544
Number of extensions: 469294
Number of successful extensions: 1194
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1194
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)