Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_K03
         (906 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            25   1.3  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              23   5.1  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   6.7  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   8.8  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = -2

Query: 674 HDTRRSSHQLLRIFQXRLKLLADSTVGKLCFKFKKHVLRFSVFCWKHSGPPSAMNKAIRS 495
           HDT+R + Q+L     +   +A + +    F   + +  F  F  K  GPP+  N  I S
Sbjct: 308 HDTQRDNPQILTYKYSKRYKMAVAFMLSHPFGTPRIMSSFD-FQSKDQGPPNDGNGNILS 366

Query: 494 PSL 486
           PS+
Sbjct: 367 PSI 369


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -1

Query: 795 TVQSVCLGQSGVARRV 748
           TVQSVC+ + G A+++
Sbjct: 28  TVQSVCMKEIGTAQQI 43


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +3

Query: 672 VKSLERVFHTDTRKHGGITDQVHAQRLSLPHR 767
           +K LER++  DT  + G    VH   +++P++
Sbjct: 111 IKMLERIWRPDTYFYNGKHSYVHT--ITVPNK 140


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -1

Query: 147 SQHTGSENRYQDSLPHHCNKET 82
           SQ     N+ +    HHCN++T
Sbjct: 51  SQPHQDHNKEKSKNNHHCNQDT 72


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,715
Number of Sequences: 438
Number of extensions: 4328
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)