Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_K02
         (820 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1271.04c |||deoxyhypusine synthase|Schizosaccharomyces pombe...   100   5e-22
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    27   2.4  
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc...    27   2.4  
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p...    27   3.2  
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc...    26   5.6  
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    26   7.4  
SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces po...    25   9.8  
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2...    25   9.8  

>SPBC1271.04c |||deoxyhypusine synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 99.5 bits (237), Expect = 5e-22
 Identities = 53/112 (47%), Positives = 68/112 (60%)
 Frame = +1

Query: 307 GTDYNKILESYANSGFQATNFGKTVVEINNMLKSRAVPLTEENSDCYEEDQFIKKKTNCT 486
           G    +++ESY   GFQATN    V  IN M   R     EE SD              T
Sbjct: 42  GITVEELVESYGKIGFQATNLHDAVTIINEMRNWRDPNPPEEKSD------------RAT 89

Query: 487 IFLGYTSNMISSGLRDTIRFLIKNKLVDVIVTTAGGIXEXLXKCIXPTFXGD 642
           IFLGYTSN+ISSG+R+ +R+L+++K VDVIVTTAGG+ E + KC+ PT+ GD
Sbjct: 90  IFLGYTSNLISSGVREVLRYLVQHKCVDVIVTTAGGVEEDIIKCLGPTYVGD 141


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 271 ETPIVAGYDWENGTDYNKILESYANSGFQATNFGKTVVE 387
           ET  +A   +ENG  + KIL  Y+ S   +   G  +VE
Sbjct: 319 ETLPMALISYENGIAFEKILNEYSASSLNSVQDGGALVE 357


>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 489

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 202 KPVKVAPNIAVNAVLQPSQDLPAETPIV 285
           +P+   PN+   A   PS  LP +TP++
Sbjct: 244 RPLSTKPNVVNGATHSPSPSLPFKTPLL 271


>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 226

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 554 LIKKRIVSLSPEDIMLEVYPRNIVQLVFFLI 462
           +I  RIV +  + I L  YPR ++Q+   +I
Sbjct: 62  MISSRIVGILEDAIFLNTYPRTLIQVSIQII 92


>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
           Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 554

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = -1

Query: 262 NLGSVAEPHLRQYLGLL*QVFRRCTGFP*LFLLFSKINY 146
           NL SV   H  Q +G       + TGFP L  +FS  NY
Sbjct: 302 NLLSVIRAHEAQDVGYRMYRKTKTTGFPSLMTIFSAPNY 340


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -3

Query: 272 SAGKSWLGCRTAFTAIFGATLTGFSTLHGISI 177
           ++G SWL  R+ FTAI  ++L   + LH  S+
Sbjct: 406 ASGLSWLTRRSVFTAILESSLI-INPLHSTSL 436


>SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 471

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +1

Query: 388 INNMLKSRAVPLTEENSDCYEEDQFIKKKTNCTIFLGYTS 507
           INN LK    P+ E N+D  +      KK++ T+ LG TS
Sbjct: 293 INNTLKPFEEPIAEGNADIEDWTFETVKKSDSTV-LGNTS 331


>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 683

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +1

Query: 358 ATNFGKTVVEINNMLKSRAVPLTEENS 438
           A N+GK ++   ++   + +P+TEE+S
Sbjct: 340 AENYGKQILFFVSIFHHQVIPMTEEHS 366


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,638,168
Number of Sequences: 5004
Number of extensions: 50126
Number of successful extensions: 136
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)