Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_K02
         (820 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    27   0.28 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.5  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    24   1.9  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   7.8  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 26.6 bits (56), Expect = 0.28
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +1

Query: 202 KPVKVAPNIAVNAVLQPSQDLPAETPIVAGYDWENGTDYNKILESYA 342
           K VK+  +IA+N+       +   TPIV  +D+ N   Y   +E YA
Sbjct: 166 KQVKIPHDIAINSTTGKRNVV---TPIVQSFDYNNTWVYIADVEGYA 209


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
 Frame = +1

Query: 310 TDYNKILESYANSGFQAT---NFGKTVVEINNMLKSRAVPLTEENSDCYEEDQFIKKKTN 480
           T+ N I     NS +  T   N   + ++I++ + +   P+  E  D YE  Q  KKK +
Sbjct: 219 TNSNSIKHESDNSDYSHTTDENRHSSTLDIDHKMLT---PIKSEPIDAYEMHQISKKKLS 275

Query: 481 CTIFLGYTSNMISS 522
                G   +MI++
Sbjct: 276 PATPKGSKCSMITT 289


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -2

Query: 153 SITHNTLNINQRPNRKYFNLIN 88
           S+++NT++ N    + Y+N+IN
Sbjct: 317 SLSNNTIHNNNYNKKLYYNIIN 338


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 325 ILESYANSGFQATNFGKTVVEI 390
           IL+ Y N G    ++ +T +EI
Sbjct: 178 ILDQYTNPGNPLAHYDQTAIEI 199


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,795
Number of Sequences: 438
Number of extensions: 3759
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26096055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)