Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP23_F_J21
(913 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 27 2.8
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 3.7
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 27 3.7
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||... 27 3.7
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 26 6.5
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 26 8.5
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 26 8.5
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 27.5 bits (58), Expect = 2.8
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = -2
Query: 795 PEGEKGGNRYSGKRAGS--GTGGRTEGAFQGETPGIF 691
P G G + G R GS G GG + G F G + G F
Sbjct: 134 PAGRGGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGF 170
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.1 bits (57), Expect = 3.7
Identities = 17/43 (39%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Frame = +2
Query: 701 GVSPWKAPSVRPPVPDP-ARLPEYLFPPFSPSGKXWPLSXXPT 826
GV P PS PPVP P A LP P P S P+
Sbjct: 1206 GVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPS 1248
Score = 26.6 bits (56), Expect = 4.9
Identities = 26/80 (32%), Positives = 30/80 (37%), Gaps = 6/80 (7%)
Frame = +2
Query: 692 KIPGVSPWKAPSVRPPVP------DPARLPEYLFPPFSPSGKXWPLSXXPTPVRFPXXRV 853
K G P PS+ PP+P P P PP +P K P+S P P RV
Sbjct: 957 KASGPRPAAPPSIPPPLPVSNILSSPTSEPPKDHPPSAPLSK--PVSTSPAA---PLARV 1011
Query: 854 XGRXPPXXGLXCTNPPGSXP 913
PP L PP P
Sbjct: 1012 ----PPVPKLSSKAPPVPLP 1027
Score = 26.6 bits (56), Expect = 4.9
Identities = 19/58 (32%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Frame = +2
Query: 659 KSEVAKPDRTIKIPGVSPWKAPSVRPPVPDPA-RLPEYLFPPFSPSGKXWPLSXXPTP 829
K VA P V P APS PPVP P+ P P +P ++ P P
Sbjct: 1096 KPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVP 1153
Score = 26.2 bits (55), Expect = 6.5
Identities = 28/97 (28%), Positives = 35/97 (36%), Gaps = 1/97 (1%)
Frame = +2
Query: 626 PPGRASQKSTLKSEVAKPDRTIKIPGVSPWKAPSVRPPVPDPARLPEYLFPPFSPSGKXW 805
PP S + P + +IP + APS PPVP P+ +P P PS
Sbjct: 1050 PPVPKSSSGAPSAPPPVPAPSSEIPSIP---APSGAPPVPAPSGIP----PVPKPSVAAP 1102
Query: 806 PLSXXPTP-VRFPXXRVXGRXPPXXGLXCTNPPGSXP 913
P+ P P V P PP PP P
Sbjct: 1103 PV---PKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVP 1136
Score = 26.2 bits (55), Expect = 6.5
Identities = 20/69 (28%), Positives = 26/69 (37%)
Frame = +2
Query: 701 GVSPWKAPSVRPPVPDPARLPEYLFPPFSPSGKXWPLSXXPTPVRFPXXRVXGRXPPXXG 880
GV P PS PPVP P+ + PP + P + P PV P + P
Sbjct: 1187 GVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLP-PVPVPTAKAPPVPAPSSE 1245
Query: 881 LXCTNPPGS 907
+ P S
Sbjct: 1246 APSVSTPRS 1254
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 27.1 bits (57), Expect = 3.7
Identities = 20/59 (33%), Positives = 30/59 (50%)
Frame = +2
Query: 635 RASQKSTLKSEVAKPDRTIKIPGVSPWKAPSVRPPVPDPARLPEYLFPPFSPSGKXWPL 811
R + S +K A RTI + GV+P+++ +RPP P +P+ PS K PL
Sbjct: 505 RLERTSPVKELPAIRPRTIPLNGVAPYES-ELRPP-PKWKPMPDLKVVRSRPSLKQRPL 561
>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 753
Score = 27.1 bits (57), Expect = 3.7
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 637 SITKIDAQVRGGETRQDYKDTRRFPLESSLGAPSCSRPCPLT 762
S T ++ G RQDY + R+ L S +PS + CP T
Sbjct: 136 SSTLTPNRIYGDRNRQDYAQSSRYTLPSLPSSPSYN--CPTT 175
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 26.2 bits (55), Expect = 6.5
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Frame = +3
Query: 630 LDEHHKNRRSSQRWRNPTGL*RYQAF----PPG 716
L ++HKNR+S+ P GL Y+A PPG
Sbjct: 387 LQDYHKNRKSNFNKPGPDGLGLYKAVLLSGPPG 419
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 25.8 bits (54), Expect = 8.5
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = +2
Query: 674 KPDRTIKIPGVSPWKAPSVRPPVPDPA-RLPEYLFPPFSPSGKXWPLSXXPTP 829
+P RT+ P AP + P+P P RLP PF + P S P P
Sbjct: 29 EPARTVSTPAFME-PAPVSKKPLPPPTRRLPRKPL-PFRSTSLQPPSSQPPAP 79
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 25.8 bits (54), Expect = 8.5
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +2
Query: 668 VAKPDRTIKIPGVSPWKAPSVRPPVPDPARLPEYLFPPFSP 790
V +P +P V P P VP+ +L E + PP P
Sbjct: 664 VPQPPAAPVVPEVPSVPQPPAVPVVPEAGQLNEPVVPPLPP 704
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,646,224
Number of Sequences: 5004
Number of extensions: 45152
Number of successful extensions: 146
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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