Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_J17
         (917 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006723-5|AAK68424.1|  575|Caenorhabditis elegans Hypothetical ...    29   6.2  
U40415-10|AAK39254.1|  215|Caenorhabditis elegans Dnaj domain (p...    28   8.1  

>AC006723-5|AAK68424.1|  575|Caenorhabditis elegans Hypothetical
           protein Y19D10B.5 protein.
          Length = 575

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 29/86 (33%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
 Frame = -2

Query: 304 FVSEFNISSCSTCKW*CTESKGRST-GRNKNRRVLHT---YSYRDRSKEANI*KYQSFHF 137
           F+S F+  +    K     +KGRST   NKN   L +   Y Y+   K  N+ + Q  +F
Sbjct: 487 FLSNFSFPNLKLAK-----TKGRSTIWFNKNSEALSSDSAYCYK-LQKSLNLNENQLIYF 540

Query: 136 SVSVKLGMNGFFSLFMFCHLRDFVVQ 59
                    G F LF F  L DFV Q
Sbjct: 541 DEKTC----GLFGLFFFILLGDFVFQ 562


>U40415-10|AAK39254.1|  215|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 14 protein.
          Length = 215

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 140 LQRFCKTWYEWFF*SFYVLSLERFCC 63
           LQ   K W++W F +F +L+   FCC
Sbjct: 121 LQWMLKPWFKWTFFAFGLLTGGFFCC 146


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,217,890
Number of Sequences: 27780
Number of extensions: 89950
Number of successful extensions: 233
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2349764032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)