Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_J16
         (849 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0148 + 1174097-1174289,1174539-1174672,1174760-1175098          108   6e-24
01_07_0123 + 41206782-41206844,41207701-41207782,41208587-412087...    97   2e-20
01_04_0012 - 15075505-15075636,15075719-15075784                       29   6.2  
04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355     28   8.2  
03_05_1079 + 30222017-30222903,30222992-30223117,30223752-302238...    28   8.2  

>03_01_0148 + 1174097-1174289,1174539-1174672,1174760-1175098
          Length = 221

 Score =  108 bits (259), Expect = 6e-24
 Identities = 47/68 (69%), Positives = 61/68 (89%)
 Frame = +2

Query: 359 SKQSRGEKKARKIMSKLGLKPVQGVERVTIRKSKNILFVINSPDVYKNPHSDTYIVFGEA 538
           SKQSR EKK+RK M KLG+KPV GV R+TI+++KNILFV++ PDV+K+P S+TY++FGEA
Sbjct: 75  SKQSRSEKKSRKAMMKLGMKPVTGVSRITIKRAKNILFVVSKPDVFKSPTSETYVIFGEA 134

Query: 539 KIEDLSTQ 562
           KIEDLS+Q
Sbjct: 135 KIEDLSSQ 142



 Score = 31.1 bits (67), Expect = 1.2
 Identities = 14/18 (77%), Positives = 18/18 (100%)
 Frame = +1

Query: 718 IVMSQANVSRAKAVRALK 771
           +VM+QA+VSRAKAV+ALK
Sbjct: 189 LVMTQASVSRAKAVKALK 206


>01_07_0123 +
           41206782-41206844,41207701-41207782,41208587-41208717,
           41208758-41209147
          Length = 221

 Score = 96.7 bits (230), Expect = 2e-20
 Identities = 53/95 (55%), Positives = 65/95 (68%), Gaps = 19/95 (20%)
 Frame = +2

Query: 335 AGIDIVSKSKQSRGEKKARKIMSKLGLKPVQGVERVTIRKSKN----------------- 463
           AG D   +SKQSR EKK+RK M KLG+K + GV RVTI+KSKN                 
Sbjct: 50  AGGDASGRSKQSRSEKKSRKAMQKLGMKTITGVSRVTIKKSKNAHRIVIYHCILLNFSLH 109

Query: 464 --ILFVINSPDVYKNPHSDTYIVFGEAKIEDLSTQ 562
             ILFVI+ PDV+K+P+SDTY++FGEAKIEDLS+Q
Sbjct: 110 YQILFVISKPDVFKSPNSDTYVIFGEAKIEDLSSQ 144



 Score = 30.7 bits (66), Expect = 1.5
 Identities = 16/31 (51%), Positives = 24/31 (77%), Gaps = 3/31 (9%)
 Frame = +1

Query: 718 IVMSQANVSRAKAVRALKNXN---LTXLMQL 801
           +VM+QA VSR++AV+ALK  N   +T +M+L
Sbjct: 189 LVMTQATVSRSRAVKALKAANGDIVTAIMEL 219


>01_04_0012 - 15075505-15075636,15075719-15075784
          Length = 65

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 537 PRLKICPHRPPWAAAERFKGTRNHSHWQ*RFHNWN 641
           PR + C  RPP A A   +  R +S W  R H W+
Sbjct: 33  PRRRPC--RPPTADAPPLQQLRPNSAWMFRIHQWD 65


>04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355
          Length = 1109

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -3

Query: 640 FQLWKRHCQWLWFLVPLNLSAAAHGGLCGQIFNLGFTENDV 518
           F + +  CQW W L   +    AHGG       + F+E D+
Sbjct: 620 FTIHQDDCQWNWKLKKYDKRVVAHGGTLNCWGVVDFSEGDL 660


>03_05_1079 +
           30222017-30222903,30222992-30223117,30223752-30223808,
           30224883-30224913,30225159-30225236,30225297-30225383
          Length = 421

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 15/70 (21%), Positives = 31/70 (44%)
 Frame = +2

Query: 422 VQGVERVTIRKSKNILFVINSPDVYKNPHSDTYIVFGEAKIEDLSTQATMGCS*EIQGHQ 601
           ++   R  ++    +L +++SP     P+ D     GEA  +  S  + +     +QGH 
Sbjct: 1   MEEANREAVQSCHRVLTLLSSPHSQLVPNKDLAAATGEAVAKFCSVASRLNNGNGLQGHA 60

Query: 602 KPQPLAMTLP 631
           + + +   LP
Sbjct: 61  RVRKIKKPLP 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,584,853
Number of Sequences: 37544
Number of extensions: 318217
Number of successful extensions: 882
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)