Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_J07
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces pomb...    29   0.66 
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   2.7  
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    27   3.5  
SPAC1F5.08c |yam8|ehs1|calcium transport protein|Schizosaccharom...    27   4.6  
SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   6.1  
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ...    26   6.1  
SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|...    26   6.1  
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces...    26   8.1  

>SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = +2

Query: 161 LYNKTNRYFRTRLLTVIEFKMCYLNIIFLTCALLATSIAQNSSKDAIGFPEMEENPDLRN 340
           +Y+ TN   RTR +    FK C   I+F+        +   + ++AI   E   N DL  
Sbjct: 140 IYDATNGTRRTRRILYDRFKNCGFKILFIESLCNKEDVINANIQEAIHVSEEFRNWDLEM 199

Query: 341 KE 346
            E
Sbjct: 200 AE 201


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 627  LXNHLYPISSSLGVNSTTLVVSCVTLSLETRFT 725
            + N   PI+SS  VNS+T + S  TL+  T  T
Sbjct: 3137 ILNSSTPITSSTVVNSSTPITSSTTLNTSTPIT 3169



 Score = 26.6 bits (56), Expect = 4.6
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 645  PISSSLGVNSTTLVVSCVTLSLETRFT 725
            PI+SS  VNS+T + S  TL+  T  T
Sbjct: 3287 PITSSTVVNSSTPITSSTTLNTSTPIT 3313


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = -3

Query: 435 QSQIQSSFWSPG*NNSLSGHLAGMNTGWRFSLFLKSGFSSISGNPI 298
           Q + + S WS   +    GH   +NT   F L L   F+ +  N I
Sbjct: 451 QEEAKKSLWSKRFSRFYYGHYVFVNTCHNFFLTLYQSFTEVDENSI 496


>SPAC1F5.08c |yam8|ehs1|calcium transport
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -3

Query: 345 SLFLKSGFSSISGNPIASFELFCAID 268
           + F++SG S++ GN + ++EL   ID
Sbjct: 128 NFFVESGESTLEGNNVINYELAAGID 153


>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +2

Query: 209 IEFKMCYLNIIFLTCALLATSIAQNSSKD 295
           + F +CY   IF+  A+ A ++ +N  +D
Sbjct: 439 VSFVVCYCVAIFIIIAIYAVNVRENRRRD 467


>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 315 ISGNPIASFELFCAIDVANNAHV 247
           I G PI +F  F  +D+A N H+
Sbjct: 124 IDGRPITNFASFNFLDLAENKHI 146


>SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 570

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/40 (25%), Positives = 23/40 (57%)
 Frame = -2

Query: 517 ILSDFTWSLSKSWPAFVCSWVI*VRWSAITNPVVFLVSRI 398
           I+S   W  S+  P +  +W++ +  +    P+++LV+R+
Sbjct: 469 IISPQLWQ-SRDAPRYYPAWIVQIVVAWFVTPIIYLVARV 507


>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +3

Query: 69  ASYISTRFVNIIRQHDFYFLTVTIVIVEHFCYITKRIDILG 191
           +SY+S  F ++I ++DF  L +  V + ++ +    +D  G
Sbjct: 207 SSYLSDHFKSLISKYDFDGLRIDAVKMMNYTFFPDFVDATG 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,198,976
Number of Sequences: 5004
Number of extensions: 69777
Number of successful extensions: 237
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)