Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_J07
         (875 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0293 - 28254673-28254878,28255189-28255306,28255767-282559...    30   2.1  
01_01_0694 + 5372779-5373429                                           29   6.5  
01_01_0633 - 4767914-4768020,4768057-4768085,4768590-4768745,476...    28   8.5  

>01_06_0293 - 28254673-28254878,28255189-28255306,28255767-28255961,
            28256701-28256800,28256887-28256972,28257078-28257239,
            28257965-28258101,28258233-28258281,28258688-28258746,
            28258862-28258896,28259384-28259433,28260173-28260332,
            28260898-28260963,28261065-28261162,28261649-28261696,
            28262114-28262242,28262667-28262769,28262858-28262954,
            28263181-28263241,28263659-28263740,28263845-28263962,
            28264039-28266325
          Length = 1481

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 17/64 (26%), Positives = 33/64 (51%)
 Frame = -1

Query: 557  ARKPELLNFVEELDTVRLHMVLVEKLASICLFLGDIGALVCNHKSSRLFGLPDRTIRCPD 378
            +R P+L+  ++EL ++ +   +++    IC+F+ DI  + CN +S     L  R     D
Sbjct: 1058 SRFPDLVGMIKELCSIEVSSFILDAEVDICVFVFDI--MFCNGQSLLNCSLRQRRKYIHD 1115

Query: 377  ILPE 366
            +  E
Sbjct: 1116 LFQE 1119


>01_01_0694 + 5372779-5373429
          Length = 216

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 15/49 (30%), Positives = 17/49 (34%)
 Frame = +2

Query: 446 HLYHPGTDKCWPAFRQGPCEVGQYLVLPQNSVIPVCEQNPCNTDTLVQW 592
           H +HP   KC PA    P         P  SV+  CE  P        W
Sbjct: 53  HRWHPRVAKCRPA---SPSAAASTAAAPPGSVVRYCEGTPRGDGAPPDW 98


>01_01_0633 -
           4767914-4768020,4768057-4768085,4768590-4768745,
           4768835-4768983,4769106-4769638,4769900-4770068,
           4770255-4770347,4770641-4770698,4771392-4771471,
           4771548-4771715,4772090-4772242,4772756-4772884,
           4772996-4773085,4773990-4774129,4774683-4774814,
           4774916-4775087
          Length = 785

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 229 FEYYISNVCVVSNINSTKQLKRCY 300
           F+Y+IS +  ++ +N   Q+KRCY
Sbjct: 545 FDYHISLIPSLNRVNLVYQIKRCY 568


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,442,808
Number of Sequences: 37544
Number of extensions: 408948
Number of successful extensions: 914
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)