Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_J07
         (875 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    25   1.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.8  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   3.7  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   3.7  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   3.7  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   4.9  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 203 LINAS*NIDSFCYITKMLNNNYSDRQEIKIMLSD 102
           ++N + NI     +  +L    SDRQ  +I+LSD
Sbjct: 261 ILNRTNNIFELVTVEPILTERPSDRQRNEILLSD 294


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -3

Query: 450  RCAGLQSQIQSSFWSPG*NNSLSGHLAG 367
            RCA L SQ     W P  N   +G + G
Sbjct: 1119 RCAALTSQSLQVSWQPPPNTHSNGIIQG 1146


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -3

Query: 450  RCAGLQSQIQSSFWSPG*NNSLSGHLAG 367
            RCA L SQ     W P  N   +G + G
Sbjct: 1115 RCAALTSQSLQVSWQPPPNTHSNGIIQG 1142


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +2

Query: 440 PAHLYHPGTDKCWPAFRQGPCEVGQYLVLPQNSVIPVC 553
           P HL HPG D     +   P ++ +Y       V PVC
Sbjct: 383 PQHLIHPGKD-INKLYGMTPSDIDKY----SRIVFPVC 415


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +2

Query: 440 PAHLYHPGTDKCWPAFRQGPCEVGQYLVLPQNSVIPVC 553
           P HL HPG D     +   P ++ +Y       V PVC
Sbjct: 383 PQHLIHPGKD-INKLYGMTPSDIDKY----SRIVFPVC 415


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +2

Query: 440 PAHLYHPGTDKCWPAFRQGPCEVGQYLVLPQNSVIPVC 553
           P HL HPG D     +   P ++ +Y       V PVC
Sbjct: 321 PQHLIHPGKD-INKLYGMTPSDIDKY----SRIVFPVC 353


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 6/21 (28%), Positives = 12/21 (57%)
 Frame = +3

Query: 117 FYFLTVTIVIVEHFCYITKRI 179
           F+F   ++++V   CY T  +
Sbjct: 150 FFFAATSLLVVAEVCYFTAHV 170


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,257
Number of Sequences: 438
Number of extensions: 5417
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)