Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_J05
         (894 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1201 - 11419851-11419913,11420090-11420311                       29   3.8  
04_03_0733 + 19116771-19116957,19117733-19117858,19117946-191180...    29   5.0  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   8.7  
06_02_0155 + 12380452-12381012                                         28   8.7  
05_04_0364 + 20658219-20658416,20658475-20658543                       28   8.7  

>07_01_1201 - 11419851-11419913,11420090-11420311
          Length = 94

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
 Frame = +3

Query: 546 LRPPDEHHKNRRSSQRWRN--PTGL*RYQAFPPGKLPRALSCSDPAAYR 686
           L PP          Q+WR+  PTG   + +FP G LP A     PA  R
Sbjct: 13  LLPPPPPLPALPQGQQWRSTGPTGKLCFCSFPAGALPPAAGAGQPAPDR 61


>04_03_0733 +
           19116771-19116957,19117733-19117858,19117946-19118061,
           19118395-19118483,19118692-19118743,19119361-19119829,
           19120985-19121367,19121450-19122132,19122561-19123152,
           19123255-19123638,19124106-19124114
          Length = 1029

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +1

Query: 610 DYKDTRRFPLESSLVRSPVPTLPLT-GYCPPFSLREAWRFLIAHAVGISVRCRSFAPSWA 786
           D+K T    L+S+L  S +P+L L  G     S  E  R ++      S+  R  +P W 
Sbjct: 410 DWKKTAPLTLQSNLYGSEIPSLLLDHGQFESLSSGENTRLILGQNPRFSI--REVSPEWT 467

Query: 787 VC 792
            C
Sbjct: 468 YC 469


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +3

Query: 306 NESAN---ARGEAVCVLGALPLPRSLTRCAR 389
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


>06_02_0155 + 12380452-12381012
          Length = 186

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 26/94 (27%), Positives = 37/94 (39%)
 Frame = +1

Query: 544 GSAPLTSITKIDAQVRGGETRQDYKDTRRFPLESSLVRSPVPTLPLTGYCPPFSLREAWR 723
           G+AP    T  D +VR       Y D +  P +      P   +P   +    +  EA +
Sbjct: 53  GAAPPAPATSPDTEVRA----PTYGDKQISPPKEGAAGKPPMVVPAANHPQAPTGEEAKK 108

Query: 724 FLIAHAVGISVRCRSFAPSWAVCTNPPFSPTAAP 825
              AH  G +V  R+   S  +   PP  P AAP
Sbjct: 109 ---AHGGGGAVGRRNGISSTVLTAPPPVGPMAAP 139


>05_04_0364 + 20658219-20658416,20658475-20658543
          Length = 88

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 593 VAKPDRTIKIPGVSPWKAPSCALLFRPCRLPDTVRLSPFGKRG 721
           V  PD T ++P +        A   RP +LP+T+ L P G+ G
Sbjct: 7   VVDPDSTCRLPVMKSRHPTRIAQSARPTQLPETLTLQP-GRSG 48


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,117,827
Number of Sequences: 37544
Number of extensions: 547405
Number of successful extensions: 1609
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1607
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)