Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_J02
         (872 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024809-1|AAF59542.4|  519|Caenorhabditis elegans Hypothetical ...    31   1.1  
Z93396-2|CAB07711.1|  343|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AC006638-8|AAK85487.2|  644|Caenorhabditis elegans Hypothetical ...    30   1.9  
U00043-12|AAC77504.2|  613|Caenorhabditis elegans Hypothetical p...    29   3.3  
AF006635-1|AAB62695.1| 1116|Caenorhabditis elegans P-type ATPase...    29   5.7  

>AC024809-1|AAF59542.4|  519|Caenorhabditis elegans Hypothetical
           protein Y53G8AR.7a protein.
          Length = 519

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 555 WGPPYNYTIWYIELHGKNQAE 617
           WGP   YT   + +HGKNQ E
Sbjct: 363 WGPDLKYTTINVTIHGKNQTE 383


>Z93396-2|CAB07711.1|  343|Caenorhabditis elegans Hypothetical
           protein ZC15.3 protein.
          Length = 343

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -1

Query: 500 CPVPQSECFRCTVFLQASS-QQQRHIAIFCSTIDLKLFEI 384
           CP  + +C RCT +++     Q  H A FC  +  K +++
Sbjct: 275 CPKEKEQCTRCTKYMKPGEIAQTHHNATFCLMLTSKQYKL 314


>AC006638-8|AAK85487.2|  644|Caenorhabditis elegans Hypothetical
           protein F41G4.7 protein.
          Length = 644

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -1

Query: 500 CPVPQSECFRCTVFLQASS-QQQRHIAIFCSTIDLKLFEI 384
           CP  + +C RCT +++     Q  H A FC  +  K +++
Sbjct: 567 CPKEKEQCTRCTKYMKPGEIAQTHHNATFCLMLTSKQYKL 606


>U00043-12|AAC77504.2|  613|Caenorhabditis elegans Hypothetical
           protein T26A5.1 protein.
          Length = 613

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +2

Query: 548 TVVGPSLQLYHMVHRVTWQKSGRTSQ*GT 634
           T+  PS QLY M HRV +  +G T+  GT
Sbjct: 229 TIHQPSSQLYQMFHRVIYLANGSTAFQGT 257


>AF006635-1|AAB62695.1| 1116|Caenorhabditis elegans P-type ATPase
            protein.
          Length = 1116

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +3

Query: 294  VSPQFIVIKLDSPSIVE--TIKFGKYIKALVSDLKKFQVYGGTEDS 425
            VS   ++     P+I    T  F ++ K L S L KFQV+ G +DS
Sbjct: 1019 VSSSLLLKNFRKPTIANLYTTSFKRHQKFLESALSKFQVHRGLDDS 1064


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,126,342
Number of Sequences: 27780
Number of extensions: 355652
Number of successful extensions: 823
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)