Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_J02
         (872 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   2.1  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    23   3.7  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   8.5  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 378 VSDLKKFQVYGGTEDSNMSLLLTAGLKKDSTPETFRLRHRT 500
           VSD++     GG ED+N  LLL A L  +S+ +     H +
Sbjct: 250 VSDVESSTSSGGNEDAN--LLLKARLNPNSSLQPSLASHHS 288


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +2

Query: 209 EPFLGLCSREHHSESTIRSIVKVVHR 286
           EP   +C R + S +++R+   + HR
Sbjct: 32  EPICNICKRVYSSLNSLRNHKSIYHR 57


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 146 LHKYGR*IRDCAAFVLYTQMLEPFL 220
           L  Y   +RD A ++LY ++L  FL
Sbjct: 408 LQSYSTSMRDPAFYMLYQKILSYFL 432


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,579
Number of Sequences: 438
Number of extensions: 4168
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)