Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_I20
         (874 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    29   0.86 
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo...    27   3.5  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    27   4.6  
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual      26   8.1  

>SPBC15D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 212

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 17/67 (25%), Positives = 36/67 (53%)
 Frame = +2

Query: 155 TGIDNPDITVTYAGVQVDLISDDDVTKFNIDDDNLKDAVRTYFGKKSVRSLLEKSNAMGR 334
           +G   P ++    G+ + + +D+DV K      N +D +R  +G+K +   L+ ++  G+
Sbjct: 36  SGFRGPRVSHLTIGM-IPVKNDEDVLKCMDFLYNKEDEIRKSYGEKKITIDLKGTSFFGK 94

Query: 335 SVQEVQI 355
           S QE ++
Sbjct: 95  SPQEAKV 101


>SPBC8D2.05c |sfi1||spindle pole body protein
           Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 840

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +3

Query: 276 RILGRSPSGVYLKSPTPWGDLYKKYKFEQVSRVLSVKSARLKS--ITKNPAIITTQDFEN 449
           RIL R  S   L     W +L ++  F QVS  L+     L +  +  +P I+   D+ +
Sbjct: 70  RILYRLISSKKLSWNDEWRNLMRRIGFSQVSSDLNTPLFPLNNTDMENDPFIVNGDDYRS 129

Query: 450 ASNK 461
            SN+
Sbjct: 130 RSNQ 133


>SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1466

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 16/62 (25%), Positives = 33/62 (53%)
 Frame = +3

Query: 291  SPSGVYLKSPTPWGDLYKKYKFEQVSRVLSVKSARLKSITKNPAIITTQDFENASNKTIK 470
            SP+ V +K     G  +++Y+F + S+V+   S +   +     ++TT D ENA   ++ 
Sbjct: 1147 SPTNV-IKYSADEGRTWQEYQFSEKSKVVVDVSTKPSGVGHQVLLLTTDD-ENAPISSVL 1204

Query: 471  VN 476
            ++
Sbjct: 1205 ID 1206


>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = -1

Query: 448 FSKSCVVMIAGFLVMDLSRADLTDNTLLTCSNLYFLYRS 332
           F ++ V +I+GFL+ +  +++  D+      +  +LY S
Sbjct: 344 FQENVVSLISGFLLKEYEKSNFLDSKFYVLIDFLYLYLS 382


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,316,868
Number of Sequences: 5004
Number of extensions: 65089
Number of successful extensions: 178
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)