Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_I18
         (899 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    30   0.39 
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    29   0.68 
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    27   2.7  
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    27   3.6  
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr...    27   4.8  

>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 14/37 (37%), Positives = 25/37 (67%)
 Frame = -3

Query: 831 STQNYSMKEFEERINKLVRK*ENKIWKYKFVENKKIK 721
           S ++YS KE+EE+I+ L  + E+K+ +   + NK +K
Sbjct: 369 SEKSYSEKEYEEKISSLRIELEDKLAEIDMLRNKLLK 405


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 29.5 bits (63), Expect = 0.68
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +2

Query: 674 LFSCIILIFNKLILPNFIFLFSTNLYFQILFSYFLTNLFILSSNSF 811
           LF C++L F       F  LF  +  F   F +FL+ +FI+  +SF
Sbjct: 112 LFRCLLLFF-------FFLLFFLSFSFSFSFLFFLSQIFIVYFSSF 150


>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 253 GIRCQKCLEFGHWSYECK 306
           G++C  C + GH S+EC+
Sbjct: 134 GVKCYSCGKIGHRSFECQ 151


>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 8/57 (14%)
 Frame = +1

Query: 247 PQGIRCQKCLEFGHWSYEC--------KGKRKILVRPSRTRIMHKNLKAKEEGQCSN 393
           P G  C +C + GHW   C         GK ++       R   KN++   EG  +N
Sbjct: 180 PPGYICYRCGQKGHWIQACPTNADPNYDGKPRVKRTTGIPRSFLKNVERPAEGDAAN 236


>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 537

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +2

Query: 686 IILIFNKLILPNFIFLFSTNLYFQILFSYFLTNLFILSSNSF 811
           + +I++     NF  ++ TN +  I  SY + +LFI+  N+F
Sbjct: 100 VYVIWSSTACINFFDIYQTNWHCSIQVSYLVQSLFIV-GNAF 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,753,508
Number of Sequences: 5004
Number of extensions: 48736
Number of successful extensions: 134
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)