Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_I17
         (973 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    25   0.29 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   5.3  

>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 25.0 bits (52), Expect(2) = 0.29
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +2

Query: 749  PPPPPPPXXXKK 784
            PPPPPPP   +K
Sbjct: 1096 PPPPPPPAEVEK 1107



 Score = 24.2 bits (50), Expect(2) = 0.29
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = +2

Query: 746  LPPPPPPP 769
            +PPPPPPP
Sbjct: 1094 VPPPPPPP 1101


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +2

Query: 749 PPPPPPPXXXKK 784
           PPPPPPP   KK
Sbjct: 24  PPPPPPPGYVKK 35


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,248,336
Number of Sequences: 5004
Number of extensions: 12817
Number of successful extensions: 199
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 499296500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)