Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP23_F_I17
(973 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 34 0.18
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 0.94
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 0.94
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 0.94
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 27 1.5
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 30 2.9
AC024790-13|AAL32247.1| 311|Caenorhabditis elegans Hypothetical... 30 2.9
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 3.8
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 3.8
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 3.8
U14634-2|AAA21560.2| 423|Caenorhabditis elegans Hypothetical pr... 26 4.5
Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical pr... 25 4.9
AF038615-6|AAB94146.1| 157|Caenorhabditis elegans Ground-like (... 29 5.0
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr... 25 6.9
Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical pr... 25 7.0
Z81106-2|CAB03220.2| 468|Caenorhabditis elegans Hypothetical pr... 24 9.7
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 33.9 bits (74), Expect = 0.18
Identities = 16/40 (40%), Positives = 16/40 (40%)
Frame = -1
Query: 973 GGXXGPPPPPPXXGGXXPXXXXXXXRXXKXKGGGXGXXGG 854
GG PPPPPP GG GGG G GG
Sbjct: 49 GGGCAPPPPPPACGGGCGGGGGGCGGGGGGCGGGGGCGGG 88
Score = 31.1 bits (67), Expect = 1.2
Identities = 22/74 (29%), Positives = 22/74 (29%)
Frame = -1
Query: 973 GGXXGPPPPPPXXGGXXPXXXXXXXRXXKXKGGGXGXXGGRXXXXXXXXXXXXXXXXXXG 794
GG PPPPPP GG GGG G GG
Sbjct: 106 GGGCAPPPPPPACGGGCGGGGGGC--GGGCGGGGGGGCGGGGGGGCGGGGGGCGGGGGGC 163
Query: 793 XGXFFXXXRGGGGG 752
G GGGGG
Sbjct: 164 GGGGGGCGGGGGGG 177
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 31.5 bits (68), Expect = 0.94
Identities = 15/41 (36%), Positives = 15/41 (36%)
Frame = +1
Query: 307 GGXPPPLWGXHDRFLDGXXVXXPGXGPPXXPXXXDXPPPPP 429
G PPP G G P G P P PPPPP
Sbjct: 262 GSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPP 302
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 31.5 bits (68), Expect = 0.94
Identities = 15/41 (36%), Positives = 15/41 (36%)
Frame = +1
Query: 307 GGXPPPLWGXHDRFLDGXXVXXPGXGPPXXPXXXDXPPPPP 429
G PPP G G P G P P PPPPP
Sbjct: 283 GSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPP 323
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 31.5 bits (68), Expect = 0.94
Identities = 15/41 (36%), Positives = 15/41 (36%)
Frame = +1
Query: 307 GGXPPPLWGXHDRFLDGXXVXXPGXGPPXXPXXXDXPPPPP 429
G PPP G G P G P P PPPPP
Sbjct: 268 GSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPP 308
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 27.5 bits (58), Expect(2) = 1.5
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -1
Query: 961 GPPPPPPXXGG 929
GPPPPPP GG
Sbjct: 588 GPPPPPPPPGG 598
Score = 21.8 bits (44), Expect(2) = 1.5
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -1
Query: 970 GXXGPPPPPP 941
G PPPPPP
Sbjct: 587 GGPPPPPPPP 596
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 29.9 bits (64), Expect = 2.9
Identities = 17/43 (39%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Frame = +1
Query: 307 GGXPPPLWGXHDRF---LDGXXVXXPGXGPPXXPXXXDXPPPP 426
GG PPP G H + L G G PP P PPPP
Sbjct: 1571 GGPPPPRGGSHCQGPPPLMGGPPPRLGMPPPGPPPPNGGPPPP 1613
>AC024790-13|AAL32247.1| 311|Caenorhabditis elegans Hypothetical
protein Y47D7A.13 protein.
Length = 311
Score = 29.9 bits (64), Expect = 2.9
Identities = 16/43 (37%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Frame = -1
Query: 973 GGXXGPPPPPP---XXGGXXPXXXXXXXRXXKXKGGGXGXXGG 854
GG PPPPPP GG P GGG GG
Sbjct: 26 GGCCAPPPPPPCGGGCGGGAPAAGGYAVAPQAPIGGGYAQPGG 68
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.5 bits (63), Expect = 3.8
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -1
Query: 961 GPPPPPPXXGGXXP 920
GPPPPPP GG P
Sbjct: 757 GPPPPPPPPGGCPP 770
Score = 29.1 bits (62), Expect = 5.0
Identities = 15/41 (36%), Positives = 15/41 (36%)
Frame = +1
Query: 307 GGXPPPLWGXHDRFLDGXXVXXPGXGPPXXPXXXDXPPPPP 429
GG PP G G G PP P PPPPP
Sbjct: 733 GGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPP 773
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.5 bits (63), Expect = 3.8
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -1
Query: 961 GPPPPPPXXGGXXP 920
GPPPPPP GG P
Sbjct: 757 GPPPPPPPPGGCPP 770
Score = 29.1 bits (62), Expect = 5.0
Identities = 15/41 (36%), Positives = 15/41 (36%)
Frame = +1
Query: 307 GGXPPPLWGXHDRFLDGXXVXXPGXGPPXXPXXXDXPPPPP 429
GG PP G G G PP P PPPPP
Sbjct: 733 GGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPP 773
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.5 bits (63), Expect = 3.8
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -1
Query: 961 GPPPPPPXXGGXXP 920
GPPPPPP GG P
Sbjct: 340 GPPPPPPPPGGCPP 353
Score = 29.1 bits (62), Expect = 5.0
Identities = 15/41 (36%), Positives = 15/41 (36%)
Frame = +1
Query: 307 GGXPPPLWGXHDRFLDGXXVXXPGXGPPXXPXXXDXPPPPP 429
GG PP G G G PP P PPPPP
Sbjct: 316 GGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPP 356
>U14634-2|AAA21560.2| 423|Caenorhabditis elegans Hypothetical
protein T15B12.2 protein.
Length = 423
Score = 25.8 bits (54), Expect(2) = 4.5
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +2
Query: 734 VXXXLPPPPPPP 769
V LPPPPPPP
Sbjct: 397 VSVELPPPPPPP 408
Score = 21.8 bits (44), Expect(2) = 4.5
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2
Query: 752 PPPPPPXXXK 781
PPPPPP K
Sbjct: 402 PPPPPPPPQK 411
>Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical
protein ZC168.5 protein.
Length = 172
Score = 25.0 bits (52), Expect(2) = 4.9
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -1
Query: 973 GGXXGPPPPPP 941
GG PPPPPP
Sbjct: 49 GGYEAPPPPPP 59
Score = 22.6 bits (46), Expect(2) = 4.9
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -1
Query: 958 PPPPPPXXGG 929
PPPPPP G
Sbjct: 55 PPPPPPSYAG 64
>AF038615-6|AAB94146.1| 157|Caenorhabditis elegans Ground-like (grd
related) protein19 protein.
Length = 157
Score = 29.1 bits (62), Expect = 5.0
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -1
Query: 973 GGXXGPPPPPPXXGG 929
GG PPPPPP GG
Sbjct: 40 GGCCAPPPPPPVCGG 54
>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical
protein C33B4.3a protein.
Length = 1110
Score = 25.0 bits (52), Expect(2) = 6.9
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -1
Query: 958 PPPPPPXXGG 929
PPPPPP GG
Sbjct: 809 PPPPPPPPGG 818
Score = 21.8 bits (44), Expect(2) = 6.9
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = -1
Query: 973 GGXXGPPPPPP 941
G PPPPPP
Sbjct: 806 GAPPPPPPPPP 816
>Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical
protein C33B4.3b protein.
Length = 993
Score = 25.0 bits (52), Expect(2) = 7.0
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -1
Query: 958 PPPPPPXXGG 929
PPPPPP GG
Sbjct: 809 PPPPPPPPGG 818
Score = 21.8 bits (44), Expect(2) = 7.0
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = -1
Query: 973 GGXXGPPPPPP 941
G PPPPPP
Sbjct: 806 GAPPPPPPPPP 816
>Z81106-2|CAB03220.2| 468|Caenorhabditis elegans Hypothetical
protein R06C1.3 protein.
Length = 468
Score = 23.8 bits (49), Expect(2) = 9.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +2
Query: 749 PPPPPPP 769
PPPPPPP
Sbjct: 360 PPPPPPP 366
Score = 22.6 bits (46), Expect(2) = 9.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +2
Query: 746 LPPPPPP 766
LPPPPPP
Sbjct: 319 LPPPPPP 325
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,751,070
Number of Sequences: 27780
Number of extensions: 169829
Number of successful extensions: 4259
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2805
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2521399358
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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