Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP23_F_I14
(871 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U64854-5|AAB18317.1| 422|Caenorhabditis elegans Hypothetical pr... 56 4e-08
U03059-1|AAA88795.1| 422|Caenorhabditis elegans ornithine decar... 56 4e-08
U97191-6|AAM15576.1| 263|Caenorhabditis elegans Hypothetical pr... 52 7e-07
U97191-5|AAB52428.1| 477|Caenorhabditis elegans Hypothetical pr... 52 7e-07
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 32 0.61
U41553-3|AAA83293.1| 289|Caenorhabditis elegans Collagen protei... 32 0.61
M25481-1|AAA27987.1| 283|Caenorhabditis elegans collagen protein. 32 0.61
Z71178-1|CAA94874.1| 297|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z81567-3|CAB04587.1| 301|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z54237-5|CAN86900.1| 273|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z54237-4|CAN86899.1| 297|Caenorhabditis elegans Hypothetical pr... 30 1.9
U80451-9|AAB37843.1| 285|Caenorhabditis elegans Collagen protei... 30 1.9
U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protei... 30 2.5
U55373-4|ABR92605.1| 210|Caenorhabditis elegans Collagen protei... 30 2.5
U23520-6|AAC46553.1| 287|Caenorhabditis elegans Collagen protei... 30 2.5
AC006672-7|AAM98004.1| 668|Caenorhabditis elegans Hypothetical ... 30 2.5
U80441-8|AAB37656.1| 284|Caenorhabditis elegans Dumpy : shorter... 29 3.3
AL032627-19|CAD66222.1| 309|Caenorhabditis elegans Hypothetical... 29 3.3
Z83319-2|CAB05904.2| 433|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z81479-3|CAB03942.1| 283|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical pr... 29 4.3
CU457737-9|CAM36330.1| 281|Caenorhabditis elegans Hypothetical ... 29 4.3
AF125960-2|AAD14736.1| 478|Caenorhabditis elegans Hypothetical ... 29 4.3
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 29 5.7
L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen... 29 5.7
AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen prot... 29 5.7
AF047652-2|AAC04393.3| 256|Caenorhabditis elegans Collagen prot... 29 5.7
AF047652-1|AAO44912.1| 294|Caenorhabditis elegans Collagen prot... 29 5.7
AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen prot... 29 5.7
AC024778-1|AAF60567.1| 393|Caenorhabditis elegans Collagen prot... 29 5.7
AC006790-10|AAF60736.1| 371|Caenorhabditis elegans Collagen pro... 29 5.7
Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical pr... 28 7.5
X58982-1|CAA41731.1| 498|Caenorhabditis elegans degenerin protein. 28 7.5
U58726-8|AAB00580.3| 768|Caenorhabditis elegans Mechanosensory ... 28 7.5
U53669-1|AAC47265.1| 768|Caenorhabditis elegans MEC-4 protein. 28 7.5
AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen stru... 28 7.5
AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen stru... 28 7.5
AL132898-21|CAC14418.2| 617|Caenorhabditis elegans Hypothetical... 28 7.5
AL132863-12|CAC15862.2| 617|Caenorhabditis elegans Hypothetical... 28 7.5
AF160189-1|AAD45355.1| 617|Caenorhabditis elegans putative seri... 28 7.5
AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen pro... 28 7.5
AF022985-9|AAB69960.1| 314|Caenorhabditis elegans Collagen prot... 28 7.5
Z81586-9|CAB04699.2| 676|Caenorhabditis elegans Hypothetical pr... 28 10.0
Z71178-2|CAA94875.1| 297|Caenorhabditis elegans Hypothetical pr... 28 10.0
Z70307-10|CAA94328.1| 276|Caenorhabditis elegans Hypothetical p... 28 10.0
Z49968-1|CAA90258.2| 499|Caenorhabditis elegans Hypothetical pr... 28 10.0
U80451-8|AAB37842.2| 288|Caenorhabditis elegans Collagen protei... 28 10.0
AL032632-7|CAA21586.1| 313|Caenorhabditis elegans Hypothetical ... 28 10.0
AF039048-9|AAB94233.1| 362|Caenorhabditis elegans Hypothetical ... 28 10.0
AF039048-8|AAT68896.1| 367|Caenorhabditis elegans Hypothetical ... 28 10.0
>U64854-5|AAB18317.1| 422|Caenorhabditis elegans Hypothetical
protein K11C4.4 protein.
Length = 422
Score = 55.6 bits (128), Expect = 4e-08
Identities = 26/70 (37%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
Frame = +1
Query: 562 KVVEEQRIRVMEGSWSPVSVIREIVES-GVQEDP--FYVMDLGEVVARYQQWKELLPRVE 732
+++ + +I V+ + + R+I S +QE+ F ++DL +++ R+Q WK LP +E
Sbjct: 6 EIIGDNKIGVLPKQVDQLQMCRDIAASKDLQENDSSFMLVDLDKIIERFQLWKRELPMIE 65
Query: 733 PFYAVKCNDD 762
PFYAVKCN D
Sbjct: 66 PFYAVKCNTD 75
>U03059-1|AAA88795.1| 422|Caenorhabditis elegans ornithine
decarboxylase protein.
Length = 422
Score = 55.6 bits (128), Expect = 4e-08
Identities = 26/70 (37%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
Frame = +1
Query: 562 KVVEEQRIRVMEGSWSPVSVIREIVES-GVQEDP--FYVMDLGEVVARYQQWKELLPRVE 732
+++ + +I V+ + + R+I S +QE+ F ++DL +++ R+Q WK LP +E
Sbjct: 6 EIIGDNKIGVLPKQVDQLQMCRDIAASKDLQENDSSFMLVDLDKIIERFQLWKRELPMIE 65
Query: 733 PFYAVKCNDD 762
PFYAVKCN D
Sbjct: 66 PFYAVKCNTD 75
>U97191-6|AAM15576.1| 263|Caenorhabditis elegans Hypothetical
protein F53F10.2b protein.
Length = 263
Score = 51.6 bits (118), Expect = 7e-07
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = +1
Query: 574 EQRIRVMEGSW-SPVSVIREIVESGVQEDPFYVMDLGEVVARYQQWKELLPRVEPFYAVK 750
EQ I V+ G++ +P+ + R + PF+VMD+ + R + + +LPRV P YAV
Sbjct: 27 EQSIAVLSGAYRNPIEMARHVAARCGSYQPFFVMDVAAIERRLEALRVMLPRVRPNYAVA 86
Query: 751 CNDD 762
CN D
Sbjct: 87 CNAD 90
>U97191-5|AAB52428.1| 477|Caenorhabditis elegans Hypothetical
protein F53F10.2a protein.
Length = 477
Score = 51.6 bits (118), Expect = 7e-07
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = +1
Query: 574 EQRIRVMEGSW-SPVSVIREIVESGVQEDPFYVMDLGEVVARYQQWKELLPRVEPFYAVK 750
EQ I V+ G++ +P+ + R + PF+VMD+ + R + + +LPRV P YAV
Sbjct: 27 EQSIAVLSGAYRNPIEMARHVAARCGSYQPFFVMDVAAIERRLEALRVMLPRVRPNYAVA 86
Query: 751 CNDD 762
CN D
Sbjct: 87 CNAD 90
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 31.9 bits (69), Expect = 0.61
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +2
Query: 215 PLKGAPGESGACGSAGRNGRTARPRPSPR 301
P +GAP SGA GS G+ R P P R
Sbjct: 832 PAQGAPSPSGAAGSNGKQPRYGTPAPPSR 860
>U41553-3|AAA83293.1| 289|Caenorhabditis elegans Collagen protein
19 protein.
Length = 289
Score = 31.9 bits (69), Expect = 0.61
Identities = 15/27 (55%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +2
Query: 224 GAPGESGACGSAGRNGRTARPRPS-PR 301
G PGE G G AGR G RP P+ PR
Sbjct: 177 GGPGEQGPQGDAGRPGAAGRPGPAGPR 203
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +2
Query: 224 GAPGESGACGSAGRNGRTARPRP 292
G PG G G AG+NG RP P
Sbjct: 231 GNPGAPGNDGEAGKNGNAGRPGP 253
>M25481-1|AAA27987.1| 283|Caenorhabditis elegans collagen protein.
Length = 283
Score = 31.9 bits (69), Expect = 0.61
Identities = 15/27 (55%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +2
Query: 224 GAPGESGACGSAGRNGRTARPRPS-PR 301
G PGE G G AGR G RP P+ PR
Sbjct: 171 GGPGEQGPQGDAGRPGAAGRPGPAGPR 197
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +2
Query: 224 GAPGESGACGSAGRNGRTARPRP 292
G PG G G AG+NG RP P
Sbjct: 225 GNPGAPGNDGEAGKNGNAGRPGP 247
>Z71178-1|CAA94874.1| 297|Caenorhabditis elegans Hypothetical
protein B0024.1 protein.
Length = 297
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +2
Query: 224 GAPGESGACGSAGRNGRTARP 286
G PG SG CG GR G RP
Sbjct: 153 GPPGPSGTCGQVGRPGPDGRP 173
>Z81567-3|CAB04587.1| 301|Caenorhabditis elegans Hypothetical
protein K08C9.4 protein.
Length = 301
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 224 GAPGESGACGSAGRNGRTARPRPSPR 301
G GE+GA G AG+NG+ + P P+
Sbjct: 185 GQDGEAGAPGPAGKNGQRGQGAPGPQ 210
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +2
Query: 224 GAPGESGACGSAGRNGRTARPRP 292
G PG+ GA G AG NG P P
Sbjct: 103 GQPGDDGAPGKAGDNGHDGIPSP 125
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = +2
Query: 218 LKGAPGESGA---CGSAGRNGRTARPRPSPRCWRRALNVDPP 334
+ GAPGE+G G+AG++G P P+ + +R P
Sbjct: 168 IDGAPGEAGPQGDAGAAGQDGEAGAPGPAGKNGQRGQGAPGP 209
>Z54237-5|CAN86900.1| 273|Caenorhabditis elegans Hypothetical
protein T11B7.3b protein.
Length = 273
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 224 GAPGESGACGSAGRNGRTARPRPSP 298
GAPG+ GA G G +G+ R +P P
Sbjct: 191 GAPGQDGAPGHPGADGQRQRGQPGP 215
>Z54237-4|CAN86899.1| 297|Caenorhabditis elegans Hypothetical
protein T11B7.3a protein.
Length = 297
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 224 GAPGESGACGSAGRNGRTARPRPSP 298
GAPG+ GA G G +G+ R +P P
Sbjct: 191 GAPGQDGAPGHPGADGQRQRGQPGP 215
>U80451-9|AAB37843.1| 285|Caenorhabditis elegans Collagen protein
73 protein.
Length = 285
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +2
Query: 221 KGAPGESGACGSAGRNGRTARP-RPSPR 301
KG PG+ GA G G NGR P P P+
Sbjct: 155 KGPPGQPGAPGEQGPNGRPGAPGAPGPQ 182
>U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protein
140, isoform a protein.
Length = 289
Score = 29.9 bits (64), Expect = 2.5
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 221 KGAPGESGACGSAGRNGRTARPRP 292
+G PGE G G +G NGR P P
Sbjct: 153 RGPPGEVGPAGPSGDNGRKGPPGP 176
>U55373-4|ABR92605.1| 210|Caenorhabditis elegans Collagen protein
140, isoform b protein.
Length = 210
Score = 29.9 bits (64), Expect = 2.5
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 221 KGAPGESGACGSAGRNGRTARPRP 292
+G PGE G G +G NGR P P
Sbjct: 153 RGPPGEVGPAGPSGDNGRKGPPGP 176
>U23520-6|AAC46553.1| 287|Caenorhabditis elegans Collagen protein
175 protein.
Length = 287
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 221 KGAPGESGACGSAGRNGRTARPRPSPRCWRR 313
+G PGE+G G G G T P P R +R
Sbjct: 171 RGTPGEAGTPGPVGEPGETGGPGPQGRPGQR 201
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 221 KGAPGESGACGSAGRNGRT 277
KG PG+ G G G+NGRT
Sbjct: 237 KGNPGDEGRQGHPGKNGRT 255
>AC006672-7|AAM98004.1| 668|Caenorhabditis elegans Hypothetical
protein K08D12.6 protein.
Length = 668
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/55 (27%), Positives = 22/55 (40%)
Frame = +3
Query: 225 EHRVSPARVAVPGGTDAQXXXXXXXXXXDEPST*TRPGCAVPGPADATSPHSPDT 389
+ +V+PA A P DA P+ P C PA A +P + D+
Sbjct: 294 DEQVTPAPAAAPAPADAPVEQAPVAVPAPAPAAAPAPDCGSAAPAPAAAPAATDS 348
>U80441-8|AAB37656.1| 284|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 5 protein.
Length = 284
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 224 GAPGESGACGSAGRNGRTARP 286
GAPGE G G G+NG T P
Sbjct: 103 GAPGEPGGTGPDGKNGPTGLP 123
>AL032627-19|CAD66222.1| 309|Caenorhabditis elegans Hypothetical
protein Y41C4A.16 protein.
Length = 309
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +2
Query: 221 KGAPGESGACGSAGRNGRTARPRPSPRCWRRALNVDPP 334
+GAPG G GS GR G A+ + +P +A PP
Sbjct: 199 RGAPGHPGQAGSPGRPGVDAQSQSNPGAPGQAGPQGPP 236
>Z83319-2|CAB05904.2| 433|Caenorhabditis elegans Hypothetical
protein T02D1.6 protein.
Length = 433
Score = 29.1 bits (62), Expect = 4.3
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = -1
Query: 481 CRFLVTFQLSGLAVSSVVGAWSWGPTSAS-PQVSGECGEVASAGPGTAQPGRVYV 320
C F+++ L + SV+G W +G T V G G +AS TA YV
Sbjct: 113 CDFVMSLSLPPAILDSVIGFWIFGTTMCKVHHVFGSVGRIASTFLITAMSFDRYV 167
>Z81479-3|CAB03942.1| 283|Caenorhabditis elegans Hypothetical
protein C34F6.3 protein.
Length = 283
Score = 29.1 bits (62), Expect = 4.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 221 KGAPGESGACGSAGRNGRTARPRPSP 298
+G PGE+G G GR G+ + R +P
Sbjct: 180 RGPPGEAGPDGEGGRPGQAGQTRSAP 205
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +2
Query: 224 GAPGESGACGSAGRNGRTARPRP 292
G+PGE G G AG GR P P
Sbjct: 218 GSPGEPGPDGRAGHPGRNGPPGP 240
>Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical
protein C34F6.2 protein.
Length = 283
Score = 29.1 bits (62), Expect = 4.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 221 KGAPGESGACGSAGRNGRTARPRPSP 298
+G PGE+G G GR G+ + R +P
Sbjct: 180 RGPPGEAGPDGEGGRPGQAGQTRSAP 205
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +2
Query: 224 GAPGESGACGSAGRNGRTARPRP 292
G+PGE G G AG GR P P
Sbjct: 218 GSPGEPGPDGRAGHPGRNGPPGP 240
>Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical
protein C09G5.6 protein.
Length = 948
Score = 29.1 bits (62), Expect = 4.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 218 LKGAPGESGACGSAGRNGRTARPRPSP 298
+ G+PG G G GRNG++ + P P
Sbjct: 469 MNGSPGTPGKPGLPGRNGQSCKSIPGP 495
>CU457737-9|CAM36330.1| 281|Caenorhabditis elegans Hypothetical
protein C52D10.13 protein.
Length = 281
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +2
Query: 224 GAPGESGACGSAGRNGRTARP-RPSPR 301
G PGE G G AG++GR +P R P+
Sbjct: 210 GEPGEQGPKGEAGQDGRPGQPGRQGPQ 236
>AF125960-2|AAD14736.1| 478|Caenorhabditis elegans Hypothetical
protein T12B3.2 protein.
Length = 478
Score = 29.1 bits (62), Expect = 4.3
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = +2
Query: 92 SMRLYGTNVLLIYLREQYYLQHLATACRVVA*EIIKALRITPLKGAPGESGACGSAGRNG 271
SM +G VL++YL ++++ AC + A E+++ TP + + +G+C R G
Sbjct: 356 SMDYHGIGVLIVYLIGTTFIEYTWDACYLCAIELME----TPSRAS--ATGSCSLIARIG 409
Query: 272 RTARP--RPSPRCWRRALNV 325
P + W A+NV
Sbjct: 410 MILAPFLTYANTWWSPAVNV 429
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = +1
Query: 259 RAERTHSPPXXXXXXXXTSPQRRPALAAPCQGPLTPP 369
R SPP SPQRRP P P PP
Sbjct: 148 RTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNPP 184
>L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen
protein.
Length = 308
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +2
Query: 224 GAPGESGACGSAGRNGRTARPRPSP 298
GAPGE+GA GS G PR +P
Sbjct: 282 GAPGEAGAPGSGGGCDHCPPPRTAP 306
>AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen protein
69 protein.
Length = 394
Score = 28.7 bits (61), Expect = 5.7
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +2
Query: 224 GAPGESGACGSAGRNGRTARP 286
G PG G CG AGR G P
Sbjct: 217 GLPGPPGPCGEAGREGPNGTP 237
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +2
Query: 194 IKALRITPLKGAPGESGACGSAGRNGRTARPRP 292
I+ + + KG PG G CG G G T P P
Sbjct: 248 IRQISLPGRKGPPGLPGQCGPPGPPGYTPPPGP 280
>AF047652-2|AAC04393.3| 256|Caenorhabditis elegans Collagen protein
107, isoform a protein.
Length = 256
Score = 28.7 bits (61), Expect = 5.7
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +2
Query: 224 GAPGESGACGSAGRNG 271
GAPGE G G AG+NG
Sbjct: 101 GAPGEDGTPGQAGKNG 116
>AF047652-1|AAO44912.1| 294|Caenorhabditis elegans Collagen protein
107, isoform b protein.
Length = 294
Score = 28.7 bits (61), Expect = 5.7
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +2
Query: 224 GAPGESGACGSAGRNG 271
GAPGE G G AG+NG
Sbjct: 101 GAPGEDGTPGQAGKNG 116
>AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen protein
48 protein.
Length = 285
Score = 28.7 bits (61), Expect = 5.7
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 224 GAPGESGACGSAGRNGRTARPRP 292
G PG+ G G+ GRNG P P
Sbjct: 152 GPPGQDGIPGNPGRNGEDGAPGP 174
>AC024778-1|AAF60567.1| 393|Caenorhabditis elegans Collagen protein
115 protein.
Length = 393
Score = 28.7 bits (61), Expect = 5.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 215 PLKGAPGESGACGSAGRNGRTARP 286
P G PG GA G +GR+G+ +P
Sbjct: 193 PRYGPPGAPGASGQSGRDGQDGQP 216
>AC006790-10|AAF60736.1| 371|Caenorhabditis elegans Collagen
protein 71 protein.
Length = 371
Score = 28.7 bits (61), Expect = 5.7
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +2
Query: 224 GAPGESGACGSAGRNGRTARPRPSPR 301
G GE GA G G N + P P P+
Sbjct: 265 GKIGEPGATGETGENAENSEPTPGPQ 290
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 224 GAPGESGACGSAGRNGRTARPRPSP 298
G PG +G G+ G NG RP +P
Sbjct: 184 GRPGPNGKAGANGLNGNPGRPPEAP 208
>Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical
protein C29F4.1 protein.
Length = 299
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2
Query: 224 GAPGESGACGSAGRNGRTARP 286
GAPG +G G AG NG P
Sbjct: 154 GAPGPAGPAGDAGANGNPGAP 174
>Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.6 protein.
Length = 299
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2
Query: 224 GAPGESGACGSAGRNGRTARP 286
GAPG +G G AG NG P
Sbjct: 154 GAPGPAGPAGDAGANGNPGAP 174
>Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.4 protein.
Length = 299
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2
Query: 224 GAPGESGACGSAGRNGRTARP 286
GAPG +G G AG NG P
Sbjct: 154 GAPGPAGPAGDAGANGNPGAP 174
>X58982-1|CAA41731.1| 498|Caenorhabditis elegans degenerin protein.
Length = 498
Score = 28.3 bits (60), Expect = 7.5
Identities = 10/28 (35%), Positives = 21/28 (75%)
Frame = +1
Query: 190 DNKSFKNYSIKGSTG*VRRVWQCRAERT 273
DN+ ++NY ++ +TG + + +C++ERT
Sbjct: 10 DNEHYENYDVEATTG-MNMMEECQSERT 36
>U58726-8|AAB00580.3| 768|Caenorhabditis elegans Mechanosensory
abnormality protein4 protein.
Length = 768
Score = 28.3 bits (60), Expect = 7.5
Identities = 10/28 (35%), Positives = 21/28 (75%)
Frame = +1
Query: 190 DNKSFKNYSIKGSTG*VRRVWQCRAERT 273
DN+ ++NY ++ +TG + + +C++ERT
Sbjct: 280 DNEHYENYDVEATTG-MNMMEECQSERT 306
>U53669-1|AAC47265.1| 768|Caenorhabditis elegans MEC-4 protein.
Length = 768
Score = 28.3 bits (60), Expect = 7.5
Identities = 10/28 (35%), Positives = 21/28 (75%)
Frame = +1
Query: 190 DNKSFKNYSIKGSTG*VRRVWQCRAERT 273
DN+ ++NY ++ +TG + + +C++ERT
Sbjct: 280 DNEHYENYDVEATTG-MNMMEECQSERT 306
>AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-3) protein.
Length = 299
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2
Query: 224 GAPGESGACGSAGRNGRTARP 286
GAPG +G G AG NG P
Sbjct: 154 GAPGPAGPAGDAGANGNPGAP 174
>AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-117) protein.
Length = 299
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2
Query: 224 GAPGESGACGSAGRNGRTARP 286
GAPG +G G AG NG P
Sbjct: 154 GAPGPAGPAGDAGANGNPGAP 174
>AL132898-21|CAC14418.2| 617|Caenorhabditis elegans Hypothetical
protein Y59A8B.14 protein.
Length = 617
Score = 28.3 bits (60), Expect = 7.5
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Frame = +3
Query: 258 PGGTDAQXXXXXXXXXXDEPST*TRPGCAVPGPA-----DATSPHSPDTCGLALVGPQDQ 422
P G + PS+ + P CA PGPA ++T+ + +T G+A D
Sbjct: 531 PDGVEGSEDSAAPLGPQRRPSSRSMPTCAPPGPAAGNAQNSTAENGAETDGVA--SASDP 588
Query: 423 APTTLDTANP 452
PT A P
Sbjct: 589 PPTAAPGAPP 598
>AL132863-12|CAC15862.2| 617|Caenorhabditis elegans Hypothetical
protein Y59A8B.14 protein.
Length = 617
Score = 28.3 bits (60), Expect = 7.5
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Frame = +3
Query: 258 PGGTDAQXXXXXXXXXXDEPST*TRPGCAVPGPA-----DATSPHSPDTCGLALVGPQDQ 422
P G + PS+ + P CA PGPA ++T+ + +T G+A D
Sbjct: 531 PDGVEGSEDSAAPLGPQRRPSSRSMPTCAPPGPAAGNAQNSTAENGAETDGVA--SASDP 588
Query: 423 APTTLDTANP 452
PT A P
Sbjct: 589 PPTAAPGAPP 598
>AF160189-1|AAD45355.1| 617|Caenorhabditis elegans putative
serine-threonine kinasePAR-4 protein.
Length = 617
Score = 28.3 bits (60), Expect = 7.5
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Frame = +3
Query: 258 PGGTDAQXXXXXXXXXXDEPST*TRPGCAVPGPA-----DATSPHSPDTCGLALVGPQDQ 422
P G + PS+ + P CA PGPA ++T+ + +T G+A D
Sbjct: 531 PDGVEGSEDSAAPLGPQRRPSSRSMPTCAPPGPAAGNAQNSTAENGAETDGVA--SASDP 588
Query: 423 APTTLDTANP 452
PT A P
Sbjct: 589 PPTAAPGAPP 598
>AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen
protein 142 protein.
Length = 325
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 224 GAPGESGACGSAGRNGRTARPRPSP 298
G PG G+ G+ GR G+ +R P P
Sbjct: 182 GQPGHPGSPGNPGRGGQRSRGLPGP 206
>AF022985-9|AAB69960.1| 314|Caenorhabditis elegans Collagen protein
141 protein.
Length = 314
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 224 GAPGESGACGSAGRNGRTARPRPSP 298
G PG G+ G+ GR G+ +R P P
Sbjct: 189 GQPGHPGSPGNPGRGGQRSRGLPGP 213
>Z81586-9|CAB04699.2| 676|Caenorhabditis elegans Hypothetical
protein T05F1.11 protein.
Length = 676
Score = 27.9 bits (59), Expect = 10.0
Identities = 8/28 (28%), Positives = 20/28 (71%)
Frame = +1
Query: 502 PRRARDKLRKQVHVKLDNTMKVVEEQRI 585
P R RD+++++V ++ + ++ EE+R+
Sbjct: 406 PHRTRDEIKREVQMEYERRWRIEEEERL 433
>Z71178-2|CAA94875.1| 297|Caenorhabditis elegans Hypothetical
protein B0024.2 protein.
Length = 297
Score = 27.9 bits (59), Expect = 10.0
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +2
Query: 224 GAPGESGACGSAGRNGRTARP-RPSPR 301
G PG G G GR G RP +P+P+
Sbjct: 164 GRPGPDGRPGQPGRKGNNGRPGQPAPQ 190
>Z70307-10|CAA94328.1| 276|Caenorhabditis elegans Hypothetical
protein C39E9.9 protein.
Length = 276
Score = 27.9 bits (59), Expect = 10.0
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +2
Query: 224 GAPGESGACGSAGRNGRTARPRP 292
G PGE GA G G NG +P P
Sbjct: 89 GPPGEPGAPGDDGWNGDAGQPGP 111
>Z49968-1|CAA90258.2| 499|Caenorhabditis elegans Hypothetical
protein M110.1 protein.
Length = 499
Score = 27.9 bits (59), Expect = 10.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 224 GAPGESGACGSAGRNGRTARP 286
G PG+ G+ G AG GR RP
Sbjct: 208 GRPGKVGSRGKAGHTGRDGRP 228
>U80451-8|AAB37842.2| 288|Caenorhabditis elegans Collagen protein
20 protein.
Length = 288
Score = 27.9 bits (59), Expect = 10.0
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +2
Query: 224 GAPGESGACGSAGRNGRTARPRP 292
G PGE GA G G GR P P
Sbjct: 223 GGPGEPGADGRPGHPGRAGPPGP 245
>AL032632-7|CAA21586.1| 313|Caenorhabditis elegans Hypothetical
protein Y11D7A.11 protein.
Length = 313
Score = 27.9 bits (59), Expect = 10.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 218 LKGAPGESGACGSAGRNGRTARPRPS 295
L+GAPG +G+ G G +GR P+
Sbjct: 243 LRGAPGATGSQGPRGNDGRPGNKGPA 268
>AF039048-9|AAB94233.1| 362|Caenorhabditis elegans Hypothetical
protein F16B4.2a protein.
Length = 362
Score = 27.9 bits (59), Expect = 10.0
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +1
Query: 523 LRKQVHVKLDNTM-KVVEEQRIRVMEGSWSPVSVIREIVE 639
LR+++H L K V E+R+ ++ S+ PV + RE+V+
Sbjct: 2 LRRRIHEILSRKFPKWVFEERLEPLDWSFLPVEIRREVVK 41
>AF039048-8|AAT68896.1| 367|Caenorhabditis elegans Hypothetical
protein F16B4.2b protein.
Length = 367
Score = 27.9 bits (59), Expect = 10.0
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +1
Query: 523 LRKQVHVKLDNTM-KVVEEQRIRVMEGSWSPVSVIREIVE 639
LR+++H L K V E+R+ ++ S+ PV + RE+V+
Sbjct: 2 LRRRIHEILSRKFPKWVFEERLEPLDWSFLPVEIRREVVK 41
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,076,028
Number of Sequences: 27780
Number of extensions: 383632
Number of successful extensions: 1903
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 1123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1887
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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