Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_I08
         (878 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy...    31   0.22 
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    30   0.50 
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    27   4.7  
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe...    27   4.7  
SPCC16A11.07 |coq10||ubiquinone binding protein Coq10|Schizosacc...    26   6.1  
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz...    26   8.1  

>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 648

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = -3

Query: 570 ALVLQPVRELAEVHAVQRHLEGARLAQHQRLEGLPVGVQRHPARRLLGAPAHVAEVVP 397
           ALV+ P RELA  H + +H E  + + + R+  +  G+     +RLL    HV    P
Sbjct: 195 ALVVAPTRELA--HQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATP 250


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 25/98 (25%), Positives = 45/98 (45%)
 Frame = -1

Query: 629 APSNPMNCTSTSPSTVRCEMRWYCSRCGNSQKCTPFSATLRARGSHSTSASKVSPLACSG 450
           +PS+    T+TSPS+         S   +S   +  S++  +  S S+S+S  S  + S 
Sbjct: 143 SPSSSSTTTTTSPSSSSSS-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 197

Query: 449 IPPAVSSAPQLMLLRWFRTTHISTKRKLRCSAMSSRGS 336
              + SS+  + +     ++H S+      S+ SSR S
Sbjct: 198 SSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPS 235


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/60 (23%), Positives = 28/60 (46%)
 Frame = -3

Query: 597 VPVHREVRDALVLQPVRELAEVHAVQRHLEGARLAQHQRLEGLPVGVQRHPARRLLGAPA 418
           +P  +E ++A + Q  ++  +    QR ++       Q++    +G+  HPA R    PA
Sbjct: 112 IPFQQE-KEAAMQQQQQQQQQQQLYQRQMQSREALLSQQIPPNQIGINAHPAVRQTPQPA 170


>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 675

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 165 VSNVWACLAVLYYGSKSPNNLLTGV 91
           V + W C   +Y+   SP  L TG+
Sbjct: 158 VESAWRCAEAIYFPPSSPYTLSTGI 182


>SPCC16A11.07 |coq10||ubiquinone binding protein
           Coq10|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 164

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +1

Query: 469 ETFEALVLCEPRALKVALNGVHFCEFPHRLQYQRISHLTVD 591
           ETF++ V+C+P AL V  +  H     HRL  +  +H +++
Sbjct: 72  ETFDSKVVCDPVALTVLADASH-----HRLFRRLKTHWSIE 107


>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
           Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 504

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -3

Query: 591 VHREVR-DALVLQPVRELAEVHAVQRHLEGARLAQHQRLEGLPVG 460
           VHR+++ + L+ QP+  L   +     LE  +L +   LEG+  G
Sbjct: 185 VHRDIKPENLLFQPIEYLPSQNYTPPSLEPNKLDEGMFLEGIGAG 229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,772,736
Number of Sequences: 5004
Number of extensions: 51013
Number of successful extensions: 161
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)