Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_I06
         (896 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   0.42 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.68 
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    29   1.2  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.6  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   8.4  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 24.6 bits (51), Expect(2) = 0.42
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -2

Query: 430 PPPPPPXXXKKK 395
           PPPPPP   KK+
Sbjct: 25  PPPPPPGYVKKR 36



 Score = 23.8 bits (49), Expect(2) = 0.42
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = -2

Query: 577 PXXPXXGGXXPXPPPXPXGPGF 512
           P  P  G   P  PP P  PG+
Sbjct: 11  PPPPPPGFEPPSQPPPPPPPGY 32


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.5 bits (63), Expect = 0.68
 Identities = 14/24 (58%), Positives = 14/24 (58%)
 Frame = -1

Query: 560 GGGXPXPPPPXXGPGXFXGGGGXG 489
           GGG   PPP   GPG F G GG G
Sbjct: 194 GGGSGGPPP---GPGGFGGFGGFG 214


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 15/50 (30%), Positives = 18/50 (36%)
 Frame = +1

Query: 466 EXGVXFXXPXPPPPXKXPGPXXGGGGXGXPPPXGGXXXXPKXGGXPXKKF 615
           + G+      PPPP    GP  G GG     P G        GG    +F
Sbjct: 66  QYGITEGNAAPPPPGAEGGPGAGFGGFPGAGPGGARTFHFNMGGPGGAQF 115


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -1

Query: 584 GXXXXPPXGGGXPXPPPPXXGP 519
           G    PP G   P PPPP   P
Sbjct: 349 GSIPLPPQGRSAPPPPPPRSAP 370


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 18/56 (32%), Positives = 18/56 (32%)
 Frame = -1

Query: 566 PXGGGXPXPPPPXXGPGXFXGGGGXGXXXXTPXSPXXXXXXXXXKXPPPPPXPXKK 399
           P  GG P PPPP   PG      G G     P  P           P P   P  K
Sbjct: 756 PIMGGPPPPPPP---PGV----AGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEPK 804


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.155    0.534 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,532,846
Number of Sequences: 5004
Number of extensions: 19384
Number of successful extensions: 170
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)